Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KJP77_RS19255 Genome accession   NZ_OX419554
Coordinates   3664154..3664843 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis isolate NRS6160     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3659154..3669843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP77_RS19220 (NRS6160_19000) flgN 3659334..3659816 (-) 483 WP_003227999.1 flagellar protein FlgN -
  KJP77_RS19225 (NRS6160_19005) flgM 3659832..3660098 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP77_RS19230 (NRS6160_19010) yvyF 3660179..3660598 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP77_RS19235 (NRS6160_19015) comFC 3660672..3661394 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  KJP77_RS19240 (NRS6160_19020) comFB 3661358..3661654 (-) 297 WP_015483764.1 late competence protein ComFB -
  KJP77_RS19245 (NRS6160_19025) comFA 3661714..3663105 (-) 1392 WP_088467416.1 ATP-dependent helicase ComFA Machinery gene
  KJP77_RS19250 (NRS6160_19030) fakBA 3663211..3664056 (-) 846 WP_003244125.1 DegV family protein -
  KJP77_RS19255 (NRS6160_19035) degU 3664154..3664843 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP77_RS19260 (NRS6160_19040) degS 3664926..3666083 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP77_RS19265 (NRS6160_19045) yvyE 3666300..3666953 (+) 654 WP_003227979.1 YigZ family protein -
  KJP77_RS19270 (NRS6160_19050) tagV 3666953..3668128 (+) 1176 WP_088467417.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  KJP77_RS19275 (NRS6160_19055) tagO 3668201..3669277 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1156628 KJP77_RS19255 WP_003219701.1 3664154..3664843(-) (degU) [Bacillus subtilis isolate NRS6160]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1156628 KJP77_RS19255 WP_003219701.1 3664154..3664843(-) (degU) [Bacillus subtilis isolate NRS6160]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment