Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KJP77_RS19245 Genome accession   NZ_OX419554
Coordinates   3661714..3663105 (-) Length   463 a.a.
NCBI ID   WP_088467416.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6160     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3656714..3668105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP77_RS19210 (NRS6160_18990) flgL 3656885..3657781 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  KJP77_RS19215 (NRS6160_18995) flgK 3657792..3659315 (-) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  KJP77_RS19220 (NRS6160_19000) flgN 3659334..3659816 (-) 483 WP_003227999.1 flagellar protein FlgN -
  KJP77_RS19225 (NRS6160_19005) flgM 3659832..3660098 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJP77_RS19230 (NRS6160_19010) yvyF 3660179..3660598 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  KJP77_RS19235 (NRS6160_19015) comFC 3660672..3661394 (-) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  KJP77_RS19240 (NRS6160_19020) comFB 3661358..3661654 (-) 297 WP_015483764.1 late competence protein ComFB -
  KJP77_RS19245 (NRS6160_19025) comFA 3661714..3663105 (-) 1392 WP_088467416.1 ATP-dependent helicase ComFA Machinery gene
  KJP77_RS19250 (NRS6160_19030) fakBA 3663211..3664056 (-) 846 WP_003244125.1 DegV family protein -
  KJP77_RS19255 (NRS6160_19035) degU 3664154..3664843 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJP77_RS19260 (NRS6160_19040) degS 3664926..3666083 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  KJP77_RS19265 (NRS6160_19045) yvyE 3666300..3666953 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52587.68 Da        Isoelectric Point: 10.0393

>NTDB_id=1156627 KJP77_RS19245 WP_088467416.1 3661714..3663105(-) (comFA) [Bacillus subtilis isolate NRS6160]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1156627 KJP77_RS19245 WP_088467416.1 3661714..3663105(-) (comFA) [Bacillus subtilis isolate NRS6160]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ACCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.352

100

0.994

Multiple sequence alignment