Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   KJP78_RS20525 Genome accession   NZ_OX419553
Coordinates   3897626..3897745 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis isolate NRS6183     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3892626..3902745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP78_RS20505 (NRS6183_20315) albG 3892790..3893491 (+) 702 WP_029726080.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  KJP78_RS20510 (NRS6183_20320) ywhL 3893497..3894873 (-) 1377 WP_015250987.1 YncE family protein -
  KJP78_RS20515 (NRS6183_20325) ywhK 3894912..3896267 (-) 1356 WP_213416684.1 YncE family protein -
  KJP78_RS22375 - 3896264..3896494 (-) 231 WP_326256832.1 hypothetical protein -
  KJP78_RS20520 (NRS6183_20330) rapF 3896497..3897642 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  KJP78_RS20525 (NRS6183_20335) phrF 3897626..3897745 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  KJP78_RS20530 (NRS6183_20340) ywhH 3897861..3898309 (+) 449 Protein_3989 YbaK/EbsC family protein -
  KJP78_RS20535 (NRS6183_20345) speB 3898340..3899212 (-) 873 WP_198878426.1 agmatinase -
  KJP78_RS20540 (NRS6183_20350) speE 3899273..3900103 (-) 831 WP_003227543.1 spermidine synthase -
  KJP78_RS20545 (NRS6183_20355) pbpG 3900305..3902380 (+) 2076 WP_046664002.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=1156555 KJP78_RS20525 WP_009968329.1 3897626..3897745(+) (phrF) [Bacillus subtilis isolate NRS6183]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1156555 KJP78_RS20525 WP_009968329.1 3897626..3897745(+) (phrF) [Bacillus subtilis isolate NRS6183]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment