Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   KJP78_RS17505 Genome accession   NZ_OX419553
Coordinates   3298222..3299121 (-) Length   299 a.a.
NCBI ID   WP_015251332.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6183     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3293222..3304121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP78_RS17470 (NRS6183_17335) mrpE 3293462..3293938 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KJP78_RS17475 (NRS6183_17340) mrpF 3293938..3294222 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KJP78_RS17480 (NRS6183_17345) mnhG 3294206..3294580 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  KJP78_RS17485 (NRS6183_17350) yuxO 3294619..3294999 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  KJP78_RS17490 (NRS6183_17355) comA 3295018..3295662 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KJP78_RS17495 (NRS6183_17360) comP 3295743..3298052 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  KJP78_RS17500 (NRS6183_17365) comX 3298067..3298234 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  KJP78_RS17505 (NRS6183_17370) comQ 3298222..3299121 (-) 900 WP_015251332.1 ComX modifying isoprenyl transferase ComQ Regulator
  KJP78_RS17510 (NRS6183_17375) degQ 3299306..3299446 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KJP78_RS17515 - 3299668..3299793 (+) 126 WP_003228793.1 hypothetical protein -
  KJP78_RS17520 (NRS6183_17380) - 3299907..3300275 (+) 369 WP_014477834.1 hypothetical protein -
  KJP78_RS17525 (NRS6183_17385) pdeH 3300251..3301480 (-) 1230 WP_024572553.1 cyclic di-GMP phosphodiesterase -
  KJP78_RS17530 (NRS6183_17390) pncB 3301617..3303089 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  KJP78_RS17535 (NRS6183_17395) pncA 3303105..3303656 (-) 552 WP_014477836.1 isochorismatase family cysteine hydrolase -

Sequence


Protein


Download         Length: 299 a.a.        Molecular weight: 34188.12 Da        Isoelectric Point: 4.9041

>NTDB_id=1156543 KJP78_RS17505 WP_015251332.1 3298222..3299121(-) (comQ) [Bacillus subtilis isolate NRS6183]
MKEIVEQNIFNEDLSQLLYSFIDSKETFSFAESTILHYVVFGGENLDVATRLGAGIEILILSSDIMDDLEDEDNHHALWM
KINRSESLNAALSLYTVGLTSIYSLNNNPLIFKYVLKYVNEAMQGQHDDITNKSKTEDESLEVIRLKCGSLIALANVAGV
LLATGVYNETVERYSYYKGIIAQISGDYYVLLSGNRSDIEKNKHTLIYLYLKRLFNDASEDLLYLISHKDLYYKSLLDKE
KFQEKLIKAGVTQYISVLLEIYKQKCISAIEQLNLDKEKKELIKECLLSYTKGDTRCKT

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1156543 KJP78_RS17505 WP_015251332.1 3298222..3299121(-) (comQ) [Bacillus subtilis isolate NRS6183]
ATGAAGGAGATTGTGGAGCAAAACATATTTAACGAGGATTTGTCACAACTTCTTTACTCATTTATTGATTCTAAAGAAAC
ATTCTCCTTTGCTGAATCCACAATCTTACATTATGTTGTTTTTGGAGGGGAGAATTTAGATGTTGCAACAAGGCTTGGCG
CGGGAATAGAAATTCTTATTCTTTCATCAGATATTATGGATGATCTTGAAGATGAAGATAATCACCATGCATTATGGATG
AAAATTAATCGCTCGGAGTCGTTAAATGCAGCACTTTCCTTGTATACAGTAGGATTAACGAGTATTTATTCATTAAATAA
CAATCCTCTAATTTTTAAATATGTTTTAAAATACGTAAACGAGGCCATGCAAGGTCAACATGACGATATCACTAATAAAT
CTAAAACAGAAGATGAAAGTTTAGAAGTAATTAGATTAAAATGTGGAAGTCTGATTGCACTAGCAAATGTAGCAGGTGTT
TTATTGGCTACAGGAGTATATAATGAAACAGTTGAAAGATATTCCTACTATAAAGGGATTATTGCTCAAATTTCTGGAGA
TTATTATGTTCTTTTATCCGGAAATCGCAGTGATATTGAAAAAAACAAACATACACTGATTTACTTATATCTTAAGCGCC
TTTTTAATGATGCTTCGGAAGATTTATTATACTTAATTTCACATAAAGACTTATATTATAAATCGTTACTTGATAAAGAG
AAATTCCAAGAAAAATTAATTAAAGCGGGAGTTACTCAATACATTTCGGTATTATTGGAAATATATAAACAGAAATGTAT
TTCTGCTATAGAACAATTAAATTTAGATAAAGAAAAAAAAGAGCTAATAAAGGAATGCTTATTAAGTTATACAAAGGGGG
ATACAAGATGCAAGACCTAA

Domains


Predicted by InterproScan.

(44-218)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

99.666

100

0.997


Multiple sequence alignment