Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KJP78_RS17490 Genome accession   NZ_OX419553
Coordinates   3295018..3295662 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6183     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3290018..3300662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP78_RS17455 (NRS6183_17320) mrpB 3291210..3291641 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  KJP78_RS17460 (NRS6183_17325) mrpC 3291641..3291982 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  KJP78_RS17465 (NRS6183_17330) mrpD 3291975..3293456 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  KJP78_RS17470 (NRS6183_17335) mrpE 3293462..3293938 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  KJP78_RS17475 (NRS6183_17340) mrpF 3293938..3294222 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  KJP78_RS17480 (NRS6183_17345) mnhG 3294206..3294580 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  KJP78_RS17485 (NRS6183_17350) yuxO 3294619..3294999 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  KJP78_RS17490 (NRS6183_17355) comA 3295018..3295662 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  KJP78_RS17495 (NRS6183_17360) comP 3295743..3298052 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  KJP78_RS17500 (NRS6183_17365) comX 3298067..3298234 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  KJP78_RS17505 (NRS6183_17370) comQ 3298222..3299121 (-) 900 WP_015251332.1 ComX modifying isoprenyl transferase ComQ Regulator
  KJP78_RS17510 (NRS6183_17375) degQ 3299306..3299446 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  KJP78_RS17515 - 3299668..3299793 (+) 126 WP_003228793.1 hypothetical protein -
  KJP78_RS17520 (NRS6183_17380) - 3299907..3300275 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1156540 KJP78_RS17490 WP_003220716.1 3295018..3295662(-) (comA) [Bacillus subtilis isolate NRS6183]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1156540 KJP78_RS17490 WP_003220716.1 3295018..3295662(-) (comA) [Bacillus subtilis isolate NRS6183]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment