Detailed information NTG1156286

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: QMX76_RS12650
• Genome accession: NZ_OX411212
• Coordinates: 2580132..2582390 (-)
• Length: 752 a.a.
• NCBI ID: WP_282249504.1
• Uniprot ID: -
• Organism: Vibrio campbellii isolate BF5_0283
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2560402..2585059	2580132..2582390	within	0

Gene organization within MGE regions

Location: 2560402..2585059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMX76_RS12575	-	2560402..2561172 (-)	771	WP_005446708.1	ABC transporter ATP-binding protein	-
QMX76_RS12580	-	2561432..2562904 (-)	1473	WP_282249498.1	54K polar flagellar sheath protein A	-
QMX76_RS12585	-	2563363..2564910 (+)	1548	WP_038892562.1	DUF3360 family protein	-
QMX76_RS12590	pflB	2565217..2567493 (+)	2277	WP_047478660.1	formate C-acetyltransferase	-
QMX76_RS12595	-	2567646..2568623 (+)	978	WP_038891576.1	lipid A deacylase LpxR family protein	-
QMX76_RS12600	pflA	2568768..2569508 (+)	741	WP_005431703.1	pyruvate formate lyase 1-activating protein	-
QMX76_RS12605	-	2569700..2570365 (+)	666	WP_282249499.1	energy-coupling factor ABC transporter permease	-
QMX76_RS12610	-	2570524..2571024 (+)	501	WP_282249500.1	YfbU family protein	-
QMX76_RS12615	-	2571514..2573448 (+)	1935	WP_005431706.1	PrkA family serine protein kinase	-
QMX76_RS12620	-	2573494..2574765 (+)	1272	WP_038891573.1	YeaH/YhbH family protein	-
QMX76_RS12625	-	2574777..2576336 (+)	1560	WP_005431687.1	SpoVR family protein	-
QMX76_RS12630	kdsB	2576418..2577176 (-)	759	WP_282249501.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
QMX76_RS12635	-	2577176..2577355 (-)	180	WP_005378451.1	Trm112 family protein	-
QMX76_RS12640	lpxK	2577336..2578343 (-)	1008	WP_282249502.1	tetraacyldisaccharide 4'-kinase	-
QMX76_RS12645	msbA	2578349..2580100 (-)	1752	WP_005431688.1	lipid A ABC transporter ATP-binding protein/permease MsbA	-
QMX76_RS12650	comEC	2580132..2582390 (-)	2259	WP_282249504.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QMX76_RS12655	-	2582399..2582908 (+)	510	WP_282249505.1	DUF2062 domain-containing protein	-
QMX76_RS12660	lolE	2583105..2584349 (-)	1245	WP_282249506.1	lipoprotein-releasing ABC transporter permease subunit LolE	-
QMX76_RS12665	lolD	2584352..2585059 (-)	708	WP_050918315.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-

Sequence

Protein

• Length: 752 a.a.
• Molecular weight: 84030.31 Da
• Isoelectric Point: 9.8354

>NTDB_id=1156286 QMX76_RS12650 WP_282249504.1 2580132..2582390(-) (comEC) [Vibrio campbellii isolate BF5_0283]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGITARAVTPDDAKWLIRTHSSFRQQIITAVDTHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRIILPKFVHLPSVVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPIAFQLAGVLWQLVDWVLLPLTWSLKFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
ILVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVALYDTGKAWNSGSIAQQVLSPVLHRRGFGTIDMFIISHADSD
HAGGRQYIEQHFSPAQKLSSQNYANYQSCIAGERWHWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQEANAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide

• Length: 2259 bp

>NTDB_id=1156286 QMX76_RS12650 WP_282249504.1 2580132..2582390(-) (comEC) [Vibrio campbellii isolate BF5_0283]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTACCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACATTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATACTCATATTGCTGAGCTTGACCATTTCCCGTTAATCAGTGCATTAGCATTTAGTGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCGTTTGGCATGAGTCTGGGCTTTGTCATTCGTATTATACTCCCCAAATTCGTTCACCTTCCTTCCGT
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCTTTGGTTCATTGGAGCCCTTGGCGAGTGTTACTACTCGCTGTCTCGATACAGCTT
TTCATCGAACCTTTTGCTTCATTCACGATGAGTTTTTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTGGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTACTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTACAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGTTGATTGTTACCCCAATTGCTTTTCAGTTGGCTGGTGTGCTTTGGCA
ACTGGTGGATTGGGTTTTGTTGCCACTGACATGGTCATTAAAGTTTGCGGTAGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACGTTAGTC
ATTCTAGTAACGGGTGTCGCCCTATTTTATGAGCGTACAACGAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGGCGCTTTATGACACAGGCAAAGCTTGGAACTCAGGGAGCATAGCGC
AACAAGTTCTCTCTCCTGTATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCTGGAGGTAGGCAATATATAGAGCAGCACTTTTCGCCAGCGCAGAAATTAAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGCATTGGCAGGCGCTTTATTTTGAAGTCCTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGCTTGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGAAGCAAATGCCCACTGGTTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (504-674)

• Competence protein (Competence) (208-466)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Vibrio campbellii strain DS40M4	97.074	100	0.971
comEC	Vibrio parahaemolyticus RIMD 2210633	66.489	100	0.665
comEC	Vibrio cholerae strain A1552	40.824	100	0.408