Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ALT831_RS14790 | Genome accession | NZ_OX359241 |
| Coordinates | 3355172..3356065 (+) | Length | 297 a.a. |
| NCBI ID | WP_049586076.1 | Uniprot ID | - |
| Organism | Alteromonas macleodii isolate Alteromonas macleodii MIT1002 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3350172..3361065
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALT831_RS14765 (MIT1002_03006) | ampD | 3350712..3351251 (-) | 540 | WP_049586083.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ALT831_RS14770 (MIT1002_03007) | - | 3351435..3351953 (+) | 519 | WP_014950400.1 | TIGR02281 family clan AA aspartic protease | - |
| ALT831_RS14775 (MIT1002_03008) | nadC | 3351986..3352840 (+) | 855 | WP_049586081.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ALT831_RS14780 (MIT1002_03009) | - | 3353419..3353844 (+) | 426 | WP_231514363.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| ALT831_RS14785 (MIT1002_03010) | pilC | 3353914..3355119 (+) | 1206 | WP_049586077.1 | type II secretion system F family protein | Machinery gene |
| ALT831_RS14790 (MIT1002_03011) | pilD | 3355172..3356065 (+) | 894 | WP_049586076.1 | A24 family peptidase | Machinery gene |
| ALT831_RS14795 (MIT1002_03012) | coaE | 3356084..3356695 (+) | 612 | WP_049586074.1 | dephospho-CoA kinase | - |
| ALT831_RS14800 (MIT1002_03013) | zapD | 3356939..3357691 (+) | 753 | WP_049586072.1 | cell division protein ZapD | - |
| ALT831_RS14805 (MIT1002_03014) | yacG | 3357825..3358052 (+) | 228 | WP_049586071.1 | DNA gyrase inhibitor YacG | - |
| ALT831_RS14810 (MIT1002_03015) | - | 3358272..3359144 (+) | 873 | WP_049586069.1 | aspartoacylase | - |
| ALT831_RS14815 (MIT1002_03016) | mutT | 3359266..3359649 (-) | 384 | WP_049586068.1 | 8-oxo-dGTP diphosphatase MutT | - |
Sequence
Protein
Download Length: 297 a.a. Molecular weight: 32786.85 Da Isoelectric Point: 7.0536
>NTDB_id=1155766 ALT831_RS14790 WP_049586076.1 3355172..3356065(+) (pilD) [Alteromonas macleodii isolate Alteromonas macleodii MIT1002]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGAPTPNDKNSTASEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLKGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWPGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGAPTPNDKNSTASEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLKGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWPGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL
Nucleotide
Download Length: 894 bp
>NTDB_id=1155766 ALT831_RS14790 WP_049586076.1 3355172..3356065(+) (pilD) [Alteromonas macleodii isolate Alteromonas macleodii MIT1002]
ATGGACGCGATAATTACGCTCAGTCAGCTTTACCCTGCTGTATTCTACTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAACGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGCGCCGACACCCAACGATAAAAACTCAACGGCATCAGAGGAAGTATTTAACCTTGTAAAACCAGACAGCACC
TGCCCTAGTTGCGGCCACAAAATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAAAGGTAAATGCGC
TAAGTGCAAAGTTGGAATATCAGTTCGTTACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAAATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTCGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGTTTATGGTCTGTTTATTGGCTATTTAAACTTGCCACTG
GCAAAGAAGGTATGGGCTATGGCGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCCAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTATCTTG
ATTACGTACTTTAG
ATGGACGCGATAATTACGCTCAGTCAGCTTTACCCTGCTGTATTCTACTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAACGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGCGCCGACACCCAACGATAAAAACTCAACGGCATCAGAGGAAGTATTTAACCTTGTAAAACCAGACAGCACC
TGCCCTAGTTGCGGCCACAAAATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAAAGGTAAATGCGC
TAAGTGCAAAGTTGGAATATCAGTTCGTTACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAAATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTCGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGTTTATGGTCTGTTTATTGGCTATTTAAACTTGCCACTG
GCAAAGAAGGTATGGGCTATGGCGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCCAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTATCTTG
ATTACGTACTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.737 |
95.96 |
0.525 |
| pilD | Vibrio campbellii strain DS40M4 |
52.759 |
97.643 |
0.515 |
| pilD | Acinetobacter baumannii D1279779 |
50.179 |
93.939 |
0.471 |
| pilD | Acinetobacter nosocomialis M2 |
49.821 |
93.939 |
0.468 |
| pilD | Neisseria gonorrhoeae MS11 |
47.566 |
89.899 |
0.428 |