Detailed information NTG0115572

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: A429_RS03540
• Genome accession: NZ_CP007009
• Coordinates: 691505..691984 (+)
• Length: 159 a.a.
• NCBI ID: WP_012951314.1
• Uniprot ID: A0A3A7SS43
• Organism: Listeria monocytogenes serotype 1/2a str. 08-6056
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 686505..696984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A429_RS15650	-	686517..686693 (+)	177	WP_012951305.1	hypothetical protein	-
A429_RS15725 (A429_0680)	-	686707..687231 (+)	525	WP_012951306.1	hypothetical protein	-
A429_RS03500 (A429_0681)	-	687240..687704 (+)	465	WP_012951307.1	class I SAM-dependent methyltransferase	-
A429_RS03505 (A429_0682)	-	687701..688414 (+)	714	WP_012951308.1	N-6 DNA methylase	-
A429_RS03510 (A429_0683)	-	688425..689369 (+)	945	WP_012951309.1	site-specific integrase	-
A429_RS03515 (A429_0684)	-	689382..690062 (+)	681	WP_003762551.1	hypothetical protein	-
A429_RS03520 (A429_0685)	-	690059..690274 (+)	216	WP_012951310.1	hypothetical protein	-
A429_RS03525 (A429_0686)	-	690271..690654 (+)	384	WP_012951311.1	hypothetical protein	-
A429_RS03530 (A429_0687)	-	690676..690924 (+)	249	WP_012951312.1	ASCH/PUA domain-containing protein	-
A429_RS03535 (A429_0688)	-	690924..691505 (+)	582	WP_012951313.1	DUF3310 domain-containing protein	-
A429_RS03540 (A429_0689)	ssbA	691505..691984 (+)	480	WP_012951314.1	single-stranded DNA-binding protein	Machinery gene
A429_RS03545	-	692053..692229 (+)	177	WP_223196704.1	hypothetical protein	-
A429_RS03550 (A429_0690)	-	692290..692808 (+)	519	WP_012951316.1	sigma factor-like helix-turn-helix DNA-binding protein	-
A429_RS03555 (A429_0691)	-	692805..693347 (+)	543	WP_012951317.1	tyrosine-type recombinase/integrase	-
A429_RS03560 (A429_0692)	-	693629..693856 (+)	228	WP_012951318.1	hypothetical protein	-
A429_RS03565 (A429_0693)	-	693843..694157 (+)	315	WP_012951319.1	hypothetical protein	-
A429_RS03570	-	694154..694516 (+)	363	WP_049961585.1	HNH endonuclease signature motif containing protein	-
A429_RS03575 (A429_0694)	-	694611..695138 (+)	528	WP_012951321.1	phage terminase small subunit P27 family	-
A429_RS03580 (A429_0695)	-	695107..696858 (+)	1752	WP_012951322.1	terminase large subunit	-

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 17489.37 Da
• Isoelectric Point: 4.9719

>NTDB_id=115572 A429_RS03540 WP_012951314.1 691505..691984(+) (ssbA) [Listeria monocytogenes serotype 1/2a str. 08-6056]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNPGRATTNDYQSKANYSNNAQTSSYESGASQKDGAFVSDSKPIDISDDDLPF

Nucleotide

• Length: 480 bp

>NTDB_id=115572 A429_RS03540 WP_012951314.1 691505..691984(+) (ssbA) [Listeria monocytogenes serotype 1/2a str. 08-6056]
ATGATGAATCGTGTAGTACTTGTAGGTCGATTAACTAAAGACCCTGATTTACGATATACGCCAGCAGGCGCGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGAAAACCAGCAGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGTCGAATACAGACTCGA
AATTATGAGGACAACGACGGTAAACGCGTTTTTGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
CAACCCAGGGAGAGCTACAACGAATGATTATCAAAGCAAAGCTAATTATTCAAACAACGCTCAAACAAGCTCATATGAAT
CGGGTGCGAGCCAGAAAGACGGTGCGTTTGTTAGTGATAGCAAGCCAATCGATATTTCAGATGATGATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A3A7SS43

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	63.953	100	0.692
ssb	Latilactobacillus sakei subsp. sakei 23K	54.286	100	0.597
ssbB	Bacillus subtilis subsp. subtilis str. 168	66.981	66.667	0.447