Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ONG87_RS05245 Genome accession   NZ_OX352319
Coordinates   1173642..1174277 (+) Length   211 a.a.
NCBI ID   WP_163007608.1    Uniprot ID   -
Organism   Pseudomonas sp. MM227     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1168642..1179277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG87_RS05230 (AHFPHNDE_01042) - 1169191..1170489 (-) 1299 WP_122479332.1 serine/threonine protein kinase -
  ONG87_RS05235 (AHFPHNDE_01043) - 1170670..1171182 (-) 513 WP_264382343.1 DUF2062 domain-containing protein -
  ONG87_RS05240 (AHFPHNDE_01044) comA 1171330..1173561 (+) 2232 WP_264382344.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ONG87_RS05245 (AHFPHNDE_01045) exbB 1173642..1174277 (+) 636 WP_163007608.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ONG87_RS05250 (AHFPHNDE_01046) - 1174274..1174702 (+) 429 WP_122479328.1 biopolymer transporter ExbD -
  ONG87_RS05255 (AHFPHNDE_01047) lpxK 1174702..1175697 (+) 996 WP_264382345.1 tetraacyldisaccharide 4'-kinase -
  ONG87_RS05260 (AHFPHNDE_01048) - 1175723..1175908 (+) 186 WP_122479326.1 Trm112 family protein -
  ONG87_RS05265 (AHFPHNDE_01049) kdsB 1175905..1176669 (+) 765 WP_264382346.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ONG87_RS05270 (AHFPHNDE_01050) murB 1176705..1177727 (+) 1023 WP_264382347.1 UDP-N-acetylmuramate dehydrogenase -
  ONG87_RS05275 (AHFPHNDE_01051) - 1177768..1178361 (+) 594 WP_264382348.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22891.99 Da        Isoelectric Point: 8.6259

>NTDB_id=1155279 ONG87_RS05245 WP_163007608.1 1173642..1174277(+) (exbB) [Pseudomonas sp. MM227]
MWELVKSGGWMMLPIIVSSIVALAIIAERLWTLRASRVAPAHLVGQVWRWKKDKQLSKEKLKELRAHSPLGEILAAGLAN
SRHGREIMKESIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVIGMIEIFGSFTGGAVSGNPGVMAGGISKALVTTA
SGLIVAIPALFFHRLLQRRIDELVVGMEQEAIKLVEVVQGDREVDLAEEKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1155279 ONG87_RS05245 WP_163007608.1 1173642..1174277(+) (exbB) [Pseudomonas sp. MM227]
GTGTGGGAATTGGTTAAGTCTGGCGGCTGGATGATGTTGCCAATCATAGTGAGCTCCATCGTCGCCCTGGCTATCATCGC
CGAGCGCTTGTGGACCTTGCGTGCCAGCCGTGTTGCGCCTGCCCATCTGGTCGGCCAGGTCTGGCGCTGGAAGAAAGACA
AGCAACTGAGCAAGGAAAAGCTCAAGGAGTTGCGTGCCCACTCGCCGCTTGGCGAGATCCTCGCGGCTGGCCTGGCGAAT
TCTCGCCATGGCCGCGAAATCATGAAGGAAAGCATCGAGGAGGCGGCCAGCCGGGTCATCCACGAGCTGGAACGCTACAT
CAGTACCCTGGGCACCATTGCCGCCATGGCGCCGCTGCTGGGTCTGCTCGGCACGGTGATCGGCATGATCGAGATCTTCG
GCTCGTTCACCGGAGGCGCCGTCAGCGGTAACCCCGGTGTCATGGCGGGCGGTATCTCCAAAGCGCTGGTCACCACGGCT
TCCGGCCTCATCGTCGCGATCCCGGCGCTGTTCTTCCATCGCCTGCTGCAACGGCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTCGTGCAGGGGGATCGCGAGGTCGACCTGGCCGAGGAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

76.303

100

0.763

Multiple sequence alignment