Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QML72_RS00210 | Genome accession | NZ_OX346411 |
| Coordinates | 38146..38664 (+) | Length | 172 a.a. |
| NCBI ID | WP_016250467.1 | Uniprot ID | A0A0H2QMK6 |
| Organism | Enterococcus cecorum isolate CIRMBP-1287 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 23047..72044 | 38146..38664 | within | 0 |
Gene organization within MGE regions
Location: 23047..72044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QML72_RS00135 (CIRMBP1287_00025) | - | 23399..23620 (+) | 222 | WP_001009056.1 | hypothetical protein | - |
| QML72_RS00140 (CIRMBP1287_00026) | - | 23737..24234 (+) | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| QML72_RS00145 | - | 24323..24715 (+) | 393 | WP_240006099.1 | conjugal transfer protein | - |
| QML72_RS00150 (CIRMBP1287_00027) | - | 24699..27146 (+) | 2448 | WP_000331160.1 | ATP-binding protein | - |
| QML72_RS00155 (CIRMBP1287_00028) | - | 27149..29326 (+) | 2178 | WP_145462622.1 | YtxH domain-containing protein | - |
| QML72_RS00160 (CIRMBP1287_00029) | - | 29323..30324 (+) | 1002 | WP_000769868.1 | bifunctional lysozyme/C40 family peptidase | - |
| QML72_RS00165 (CIRMBP1287_00030) | - | 30321..31256 (+) | 936 | WP_001863540.1 | conjugal transfer protein | - |
| QML72_RS00170 | - | 31712..31927 (+) | 216 | Protein_33 | conjugal transfer protein | - |
| QML72_RS00175 | - | 32172..32288 (+) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| QML72_RS00180 (CIRMBP1287_00031) | tet(M) | 32304..34223 (+) | 1920 | WP_281955975.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| QML72_RS00185 | - | 34342..34452 (+) | 111 | Protein_36 | cysteine-rich KTR domain-containing protein | - |
| QML72_RS00190 (CIRMBP1287_00032) | - | 34525..34668 (+) | 144 | WP_158409719.1 | hypothetical protein | - |
| QML72_RS00195 (CIRMBP1287_00033) | tet(L) | 34691..36106 (+) | 1416 | WP_281955974.1 | tetracycline efflux MFS transporter Tet(L) | - |
| QML72_RS00200 (CIRMBP1287_00034) | - | 36763..37437 (+) | 675 | Protein_39 | site-specific integrase | - |
| QML72_RS00205 (CIRMBP1287_00035) | rpsF | 37804..38103 (+) | 300 | WP_016250468.1 | 30S ribosomal protein S6 | - |
| QML72_RS00210 (CIRMBP1287_00036) | ssb | 38146..38664 (+) | 519 | WP_016250467.1 | single-stranded DNA-binding protein | Machinery gene |
| QML72_RS00215 (CIRMBP1287_00037) | rpsR | 38694..38930 (+) | 237 | WP_016250466.1 | 30S ribosomal protein S18 | - |
| QML72_RS00220 (CIRMBP1287_00038) | - | 39119..39532 (+) | 414 | WP_016250465.1 | NUDIX hydrolase | - |
| QML72_RS00225 (CIRMBP1287_00039) | - | 39611..39883 (+) | 273 | WP_016250464.1 | NAD(P)H-dependent oxidoreductase | - |
| QML72_RS00230 (CIRMBP1287_00040) | - | 40109..43948 (+) | 3840 | WP_016250463.1 | YSIRK signal domain/LPXTG anchor domain surface protein | - |
| QML72_RS00235 (CIRMBP1287_00041) | - | 44157..45608 (+) | 1452 | WP_052844887.1 | DHH family phosphoesterase | - |
| QML72_RS00240 (CIRMBP1287_00042) | rplI | 45621..46073 (+) | 453 | WP_016250461.1 | 50S ribosomal protein L9 | - |
| QML72_RS00245 (CIRMBP1287_00043) | - | 46280..46612 (+) | 333 | WP_018345237.1 | hypothetical protein | - |
| QML72_RS00250 (CIRMBP1287_00044) | dnaB | 46769..48139 (+) | 1371 | WP_016250459.1 | replicative DNA helicase | - |
| QML72_RS00255 (CIRMBP1287_00045) | - | 48189..48509 (-) | 321 | WP_016250458.1 | hypothetical protein | - |
| QML72_RS00260 (CIRMBP1287_00046) | - | 48929..51097 (+) | 2169 | WP_016250457.1 | PTS transporter subunit IIBC | - |
| QML72_RS00265 (CIRMBP1287_00047) | - | 51198..51995 (+) | 798 | WP_047341527.1 | endonuclease/exonuclease/phosphatase family protein | - |
| QML72_RS00270 (CIRMBP1287_00048) | - | 52257..53549 (+) | 1293 | WP_016250455.1 | adenylosuccinate synthase | - |
| QML72_RS00275 (CIRMBP1287_00049) | - | 53764..54966 (-) | 1203 | WP_016250454.1 | MFS transporter | - |
| QML72_RS00280 (CIRMBP1287_00050) | - | 55278..56909 (-) | 1632 | WP_016250453.1 | ATP-binding cassette domain-containing protein | - |
| QML72_RS00285 (CIRMBP1287_00051) | - | 57103..57801 (-) | 699 | WP_016250452.1 | hypothetical protein | - |
| QML72_RS00290 (CIRMBP1287_00052) | - | 57839..57973 (-) | 135 | WP_016250451.1 | helix-turn-helix transcriptional regulator | - |
| QML72_RS00295 (CIRMBP1287_00053) | - | 58146..59744 (+) | 1599 | WP_016250450.1 | ABC transporter ATP-binding protein | - |
| QML72_RS00300 (CIRMBP1287_00055) | - | 59910..60896 (-) | 987 | WP_016250448.1 | LacI family DNA-binding transcriptional regulator | - |
| QML72_RS00305 (CIRMBP1287_00056) | - | 61193..62005 (+) | 813 | WP_281955963.1 | PTS sugar transporter subunit IIC | - |
| QML72_RS00310 (CIRMBP1287_00057) | - | 61992..62804 (+) | 813 | WP_016250446.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| QML72_RS00315 (CIRMBP1287_00058) | - | 62829..64298 (+) | 1470 | WP_281955964.1 | arylsulfatase | - |
| QML72_RS00320 (CIRMBP1287_00059) | - | 64328..65449 (+) | 1122 | WP_016250444.1 | radical SAM/SPASM domain-containing protein | - |
| QML72_RS00325 (CIRMBP1287_00060) | - | 65446..66219 (+) | 774 | WP_016250443.1 | sulfite exporter TauE/SafE family protein | - |
| QML72_RS00330 (CIRMBP1287_00061) | - | 66296..66604 (+) | 309 | WP_016250442.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| QML72_RS00335 | - | 66924..68285 (-) | 1362 | Protein_66 | ISL3 family transposase | - |
| QML72_RS00340 (CIRMBP1287_00064) | - | 68567..68899 (+) | 333 | WP_016250439.1 | PTS sugar transporter subunit IIB | - |
| QML72_RS00345 (CIRMBP1287_00065) | - | 68919..69281 (+) | 363 | WP_016250438.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| QML72_RS00350 (CIRMBP1287_00066) | - | 69340..70428 (+) | 1089 | WP_016250437.1 | MupG family TIM beta-alpha barrel fold protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19042.89 Da Isoelectric Point: 4.7093
>NTDB_id=1155230 QML72_RS00210 WP_016250467.1 38146..38664(+) (ssb) [Enterococcus cecorum isolate CIRMBP-1287]
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1155230 QML72_RS00210 WP_016250467.1 38146..38664(+) (ssb) [Enterococcus cecorum isolate CIRMBP-1287]
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.345 |
100 |
0.61 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.409 |
100 |
0.547 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |