Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QML77_RS00200 | Genome accession | NZ_OX346407 |
| Coordinates | 38458..38976 (+) | Length | 172 a.a. |
| NCBI ID | WP_016250467.1 | Uniprot ID | A0A0H2QMK6 |
| Organism | Enterococcus cecorum isolate CIRMBP-1274 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2656..74156 | 38458..38976 | within | 0 |
Gene organization within MGE regions
Location: 2656..74156
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QML77_RS00015 (CIRMBP1274_00003) | - | 3104..3259 (+) | 156 | WP_281956900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| QML77_RS00020 (CIRMBP1274_00004) | - | 3405..4307 (+) | 903 | WP_080961990.1 | SDR family oxidoreductase | - |
| QML77_RS00025 (CIRMBP1274_00005) | - | 4429..5640 (+) | 1212 | WP_016250476.1 | MFS transporter | - |
| QML77_RS00030 | - | 5777..6112 (+) | 336 | Protein_5 | AbrB family transcriptional regulator | - |
| QML77_RS00035 (CIRMBP1274_00007) | yaaA | 6367..6615 (+) | 249 | WP_016250474.1 | S4 domain-containing protein YaaA | - |
| QML77_RS00040 (CIRMBP1274_00008) | recF | 6602..7741 (+) | 1140 | WP_016250473.1 | DNA replication/repair protein RecF | - |
| QML77_RS00045 (CIRMBP1274_00009) | gyrB | 7768..9717 (+) | 1950 | WP_016250472.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| QML77_RS00050 (CIRMBP1274_00010) | gyrA | 9738..12242 (+) | 2505 | WP_281956901.1 | DNA gyrase subunit A | - |
| QML77_RS00055 (CIRMBP1274_00011) | - | 12458..12829 (+) | 372 | WP_281956902.1 | MmcQ/YjbR family DNA-binding protein | - |
| QML77_RS00060 (CIRMBP1274_00012) | - | 12826..13899 (+) | 1074 | WP_281956903.1 | endonuclease/exonuclease/phosphatase family protein | - |
| QML77_RS00065 (CIRMBP1274_00013) | - | 14307..14621 (+) | 315 | WP_000420682.1 | YdcP family protein | - |
| QML77_RS00070 (CIRMBP1274_00014) | - | 14637..15023 (+) | 387 | WP_000985015.1 | YdcP family protein | - |
| QML77_RS00075 (CIRMBP1274_00015) | - | 15052..16437 (+) | 1386 | WP_000813488.1 | FtsK/SpoIIIE domain-containing protein | - |
| QML77_RS00080 | - | 16440..16592 (+) | 153 | WP_000879507.1 | hypothetical protein | - |
| QML77_RS00085 (CIRMBP1274_00016) | mobT | 16615..17820 (+) | 1206 | WP_281956904.1 | MobT family relaxase | - |
| QML77_RS00090 (CIRMBP1274_00017) | - | 17863..18084 (+) | 222 | WP_001009056.1 | hypothetical protein | - |
| QML77_RS00095 (CIRMBP1274_00018) | - | 18201..18698 (+) | 498 | WP_000342539.1 | antirestriction protein ArdA | - |
| QML77_RS00100 | - | 18787..19179 (+) | 393 | WP_000723888.1 | conjugal transfer protein | - |
| QML77_RS00105 (CIRMBP1274_00019) | - | 19163..20599 (+) | 1437 | Protein_20 | ATP-binding protein | - |
| QML77_RS00110 (CIRMBP1274_00020) | - | 20664..21911 (-) | 1248 | WP_013923976.1 | ISL3 family transposase | - |
| QML77_RS00115 | - | 22042..22131 (+) | 90 | Protein_22 | IS5/IS1182 family transposase | - |
| QML77_RS00120 (CIRMBP1274_00021) | - | 22410..23327 (+) | 918 | WP_002324166.1 | ABC transporter ATP-binding protein | - |
| QML77_RS00125 (CIRMBP1274_00022) | - | 23314..24930 (+) | 1617 | WP_013085964.1 | ABC transporter permease | - |
| QML77_RS00130 (CIRMBP1274_00023) | - | 24927..25565 (+) | 639 | WP_003708736.1 | TetR/AcrR family transcriptional regulator | - |
| QML77_RS00135 (CIRMBP1274_00024) | - | 25738..26985 (-) | 1248 | WP_013923976.1 | ISL3 family transposase | - |
| QML77_RS00140 (CIRMBP1274_00025) | - | 27111..28130 (+) | 1020 | Protein_27 | ATP-binding protein | - |
| QML77_RS00145 (CIRMBP1274_00026) | - | 28133..30310 (+) | 2178 | WP_000804748.1 | membrane protein | - |
| QML77_RS00150 (CIRMBP1274_00027) | - | 30307..31308 (+) | 1002 | WP_000769868.1 | bifunctional lysozyme/C40 family peptidase | - |
| QML77_RS00155 (CIRMBP1274_00028) | - | 31305..32240 (+) | 936 | WP_001224320.1 | conjugal transfer protein | - |
| QML77_RS00160 | - | 32485..32601 (+) | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| QML77_RS00165 (CIRMBP1274_00029) | tet(M) | 32617..34536 (+) | 1920 | WP_047339182.1 | tetracycline resistance ribosomal protection protein Tet(M) | - |
| QML77_RS00170 | - | 34655..34765 (+) | 111 | Protein_33 | cysteine-rich KTR domain-containing protein | - |
| QML77_RS00175 (CIRMBP1274_00030) | - | 34838..34981 (+) | 144 | WP_158409719.1 | hypothetical protein | - |
| QML77_RS00180 (CIRMBP1274_00031) | tet(L) | 35004..36419 (+) | 1416 | WP_047342058.1 | tetracycline efflux MFS transporter Tet(L) | - |
| QML77_RS00185 | - | 36468..36851 (-) | 384 | WP_225354017.1 | hypothetical protein | - |
| QML77_RS00190 (CIRMBP1274_00032) | - | 37075..37749 (+) | 675 | Protein_37 | site-specific integrase | - |
| QML77_RS00195 (CIRMBP1274_00033) | rpsF | 38116..38415 (+) | 300 | WP_016250468.1 | 30S ribosomal protein S6 | - |
| QML77_RS00200 (CIRMBP1274_00034) | ssb | 38458..38976 (+) | 519 | WP_016250467.1 | single-stranded DNA-binding protein | Machinery gene |
| QML77_RS00205 (CIRMBP1274_00035) | rpsR | 39006..39242 (+) | 237 | WP_016250466.1 | 30S ribosomal protein S18 | - |
| QML77_RS00210 (CIRMBP1274_00036) | - | 39433..39861 (+) | 429 | WP_204645766.1 | NUDIX hydrolase | - |
| QML77_RS00215 (CIRMBP1274_00037) | - | 40246..41697 (+) | 1452 | WP_171315528.1 | DHH family phosphoesterase | - |
| QML77_RS00220 (CIRMBP1274_00038) | rplI | 41710..42162 (+) | 453 | WP_016250461.1 | 50S ribosomal protein L9 | - |
| QML77_RS00225 (CIRMBP1274_00039) | - | 42234..42701 (+) | 468 | WP_281956905.1 | NUDIX domain-containing protein | - |
| QML77_RS00230 (CIRMBP1274_00040) | dnaB | 42856..44226 (+) | 1371 | WP_281956906.1 | replicative DNA helicase | - |
| QML77_RS00235 (CIRMBP1274_00041) | - | 44791..46953 (+) | 2163 | WP_281956907.1 | PTS transporter subunit IIBC | - |
| QML77_RS00240 (CIRMBP1274_00042) | - | 47053..47850 (+) | 798 | WP_047334523.1 | endonuclease/exonuclease/phosphatase family protein | - |
| QML77_RS00245 (CIRMBP1274_00043) | - | 48110..49402 (+) | 1293 | WP_047241769.1 | adenylosuccinate synthase | - |
| QML77_RS00250 (CIRMBP1274_00044) | - | 49826..50695 (+) | 870 | WP_281956908.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| QML77_RS00255 (CIRMBP1274_00045) | - | 50968..52170 (-) | 1203 | WP_281956909.1 | MFS transporter | - |
| QML77_RS00260 (CIRMBP1274_00046) | - | 52480..54111 (-) | 1632 | WP_016250453.1 | ATP-binding cassette domain-containing protein | - |
| QML77_RS00265 (CIRMBP1274_00047) | - | 54558..54890 (+) | 333 | WP_016250439.1 | PTS sugar transporter subunit IIB | - |
| QML77_RS00270 (CIRMBP1274_00048) | - | 54910..55272 (+) | 363 | WP_016250438.1 | PTS lactose/cellobiose transporter subunit IIA | - |
| QML77_RS00275 (CIRMBP1274_00049) | - | 55331..56419 (+) | 1089 | WP_281956910.1 | MupG family TIM beta-alpha barrel fold protein | - |
| QML77_RS00280 (CIRMBP1274_00050) | - | 56689..58125 (+) | 1437 | WP_087403300.1 | 6-phospho-beta-glucosidase | - |
| QML77_RS00285 (CIRMBP1274_00051) | - | 58190..58684 (+) | 495 | WP_016250435.1 | hypothetical protein | - |
| QML77_RS00290 (CIRMBP1274_00052) | celB | 58707..60053 (+) | 1347 | WP_016250434.1 | PTS cellobiose transporter subunit IIC | - |
| QML77_RS00295 (CIRMBP1274_00053) | - | 60153..60866 (-) | 714 | WP_016250433.1 | GntR family transcriptional regulator | - |
| QML77_RS00300 (CIRMBP1274_00054) | - | 61046..62527 (+) | 1482 | WP_168931964.1 | family 1 glycosylhydrolase | - |
| QML77_RS00310 (CIRMBP1274_00057) | - | 64114..65361 (-) | 1248 | WP_281956911.1 | glutamate-5-semialdehyde dehydrogenase | - |
| QML77_RS00315 (CIRMBP1274_00058) | proB | 65377..66180 (-) | 804 | WP_235426847.1 | glutamate 5-kinase | - |
| QML77_RS12525 (CIRMBP1274_00059) | - | 66732..67004 (-) | 273 | WP_345741231.1 | hypothetical protein | - |
| QML77_RS00325 (CIRMBP1274_00060) | - | 67215..67736 (+) | 522 | WP_026209954.1 | hypothetical protein | - |
| QML77_RS00330 (CIRMBP1274_00061) | radA | 67749..69119 (+) | 1371 | WP_281956912.1 | DNA repair protein RadA | Machinery gene |
| QML77_RS00335 (CIRMBP1274_00062) | - | 69319..70425 (+) | 1107 | WP_016250426.1 | PIN/TRAM domain-containing protein | - |
| QML77_RS00340 (CIRMBP1274_00063) | rfbC | 70465..71022 (+) | 558 | WP_016250425.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| QML77_RS00345 (CIRMBP1274_00064) | - | 71273..71542 (+) | 270 | WP_243184525.1 | hypothetical protein | - |
| QML77_RS00350 (CIRMBP1274_00065) | - | 71611..72087 (+) | 477 | WP_281956913.1 | GNAT family N-acetyltransferase | - |
| QML77_RS00355 (CIRMBP1274_00066) | gltX | 72182..73639 (+) | 1458 | WP_016250422.1 | glutamate--tRNA ligase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19042.89 Da Isoelectric Point: 4.7093
>NTDB_id=1155144 QML77_RS00200 WP_016250467.1 38458..38976(+) (ssb) [Enterococcus cecorum isolate CIRMBP-1274]
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1155144 QML77_RS00200 WP_016250467.1 38458..38976(+) (ssb) [Enterococcus cecorum isolate CIRMBP-1274]
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.345 |
100 |
0.61 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.409 |
100 |
0.547 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |