Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QML63_RS00095 | Genome accession | NZ_OX346406 |
| Coordinates | 24519..25037 (+) | Length | 172 a.a. |
| NCBI ID | WP_016250467.1 | Uniprot ID | A0A0H2QMK6 |
| Organism | Enterococcus cecorum isolate CIRMBP-1212 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 19519..30037
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QML63_RS00080 (CIRMBP1212_00016) | - | 21286..22242 (+) | 957 | WP_282013335.1 | LacI family DNA-binding transcriptional regulator | - |
| QML63_RS00085 (CIRMBP1212_00017) | - | 22308..23933 (+) | 1626 | WP_282013336.1 | alpha-glucosidase | - |
| QML63_RS00090 (CIRMBP1212_00018) | rpsF | 24177..24476 (+) | 300 | WP_016250468.1 | 30S ribosomal protein S6 | - |
| QML63_RS00095 (CIRMBP1212_00019) | ssb | 24519..25037 (+) | 519 | WP_016250467.1 | single-stranded DNA-binding protein | Machinery gene |
| QML63_RS00100 (CIRMBP1212_00020) | rpsR | 25067..25303 (+) | 237 | WP_016250466.1 | 30S ribosomal protein S18 | - |
| QML63_RS00105 (CIRMBP1212_00021) | - | 25490..25918 (+) | 429 | WP_282013337.1 | NUDIX hydrolase | - |
| QML63_RS00110 (CIRMBP1212_00022) | - | 26305..27756 (+) | 1452 | WP_282013338.1 | DHH family phosphoesterase | - |
| QML63_RS00115 (CIRMBP1212_00023) | rplI | 27769..28221 (+) | 453 | WP_016250461.1 | 50S ribosomal protein L9 | - |
| QML63_RS00120 (CIRMBP1212_00024) | - | 28293..28760 (+) | 468 | WP_047334527.1 | NUDIX domain-containing protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19042.89 Da Isoelectric Point: 4.7093
>NTDB_id=1155104 QML63_RS00095 WP_016250467.1 24519..25037(+) (ssb) [Enterococcus cecorum isolate CIRMBP-1212]
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1155104 QML63_RS00095 WP_016250467.1 24519..25037(+) (ssb) [Enterococcus cecorum isolate CIRMBP-1212]
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTAAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACTTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCTGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGTGTTGCGGTGGC
TACTTTTAGTTTAGCTGTAAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACTTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCTGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.345 |
100 |
0.61 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.409 |
100 |
0.547 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |