Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QML50_RS00105 | Genome accession | NZ_OX346403 |
| Coordinates | 23245..23763 (+) | Length | 172 a.a. |
| NCBI ID | WP_016250467.1 | Uniprot ID | A0A0H2QMK6 |
| Organism | Enterococcus cecorum isolate CIRMBP-1283 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 18245..28763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QML50_RS00085 (CIRMBP1283_00017) | - | 18393..20192 (+) | 1800 | WP_281956575.1 | sugar-binding domain-containing protein | - |
| QML50_RS00090 (CIRMBP1283_00018) | - | 20277..21680 (+) | 1404 | WP_281956576.1 | family 43 glycosylhydrolase | - |
| QML50_RS00095 (CIRMBP1283_00019) | - | 21686..22684 (+) | 999 | WP_281956577.1 | aldose epimerase family protein | - |
| QML50_RS00100 (CIRMBP1283_00020) | rpsF | 22903..23202 (+) | 300 | WP_016250468.1 | 30S ribosomal protein S6 | - |
| QML50_RS00105 (CIRMBP1283_00021) | ssb | 23245..23763 (+) | 519 | WP_016250467.1 | single-stranded DNA-binding protein | Machinery gene |
| QML50_RS00110 (CIRMBP1283_00022) | rpsR | 23793..24029 (+) | 237 | WP_016250466.1 | 30S ribosomal protein S18 | - |
| QML50_RS00115 (CIRMBP1283_00023) | - | 24217..24645 (+) | 429 | WP_281956578.1 | NUDIX hydrolase | - |
| QML50_RS00120 (CIRMBP1283_00024) | - | 25030..26481 (+) | 1452 | WP_281956579.1 | DHH family phosphoesterase | - |
| QML50_RS00125 (CIRMBP1283_00025) | rplI | 26494..26946 (+) | 453 | WP_016250461.1 | 50S ribosomal protein L9 | - |
| QML50_RS00130 (CIRMBP1283_00026) | - | 27018..27485 (+) | 468 | WP_087402486.1 | NUDIX domain-containing protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19042.89 Da Isoelectric Point: 4.7093
>NTDB_id=1154976 QML50_RS00105 WP_016250467.1 23245..23763(+) (ssb) [Enterococcus cecorum isolate CIRMBP-1283]
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
MINNVVLVGRLTRDPDLRYTSSGVAVATFSLAVNRNFTSQNGERETDFINCVIWRKPAETLANYARKGTLIGLTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESKAVNDQRRQAAGNFDNNVSQPFNNNNNSFDQPASSQPFSGMPGFDRDASNTPLGG
SSIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1154976 QML50_RS00105 WP_016250467.1 23245..23763(+) (ssb) [Enterococcus cecorum isolate CIRMBP-1283]
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGCGTTGCGGTAGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
TTGATTAATAATGTTGTATTAGTAGGTAGATTAACAAGAGACCCTGATTTACGTTACACTTCTTCTGGCGTTGCGGTAGC
TACTTTTAGTTTAGCTGTGAACCGTAATTTTACCAGCCAAAATGGAGAAAGAGAAACGGACTTTATCAATTGTGTCATTT
GGCGTAAACCAGCTGAAACCTTAGCAAATTACGCTAGAAAAGGGACATTAATTGGTTTGACCGGACGTATTCAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACTGAAGTGGTTGCCGATAATTTCCAATTATTAGAGTCTAAAGC
AGTCAACGATCAACGTCGTCAAGCTGCCGGAAACTTTGATAATAATGTCTCACAACCATTTAACAATAATAACAATAGCT
TTGATCAGCCAGCTTCATCTCAACCATTTAGTGGAATGCCTGGCTTTGACCGTGATGCAAGTAACACACCACTTGGCGGA
TCAAGCATTGACATTTCAGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.345 |
100 |
0.61 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.409 |
100 |
0.547 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
61.628 |
0.366 |