Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACNMOQ_RS13980 Genome accession   NZ_OX344834
Coordinates   2810854..2811387 (-) Length   177 a.a.
NCBI ID   WP_016999204.1    Uniprot ID   -
Organism   Mammaliicoccus lentus isolate M_lentus_chr     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2805854..2816387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNMOQ_RS13950 - 2806402..2807190 (+) 789 WP_416350020.1 hypothetical protein -
  ACNMOQ_RS13955 - 2807402..2807875 (+) 474 WP_064211273.1 pyrimidine dimer DNA glycosylase/endonuclease V -
  ACNMOQ_RS13960 - 2807929..2808309 (+) 381 WP_064211272.1 YbgA family protein -
  ACNMOQ_RS13965 - 2808330..2809169 (-) 840 WP_064211271.1 DUF2785 domain-containing protein -
  ACNMOQ_RS13970 - 2809420..2810319 (+) 900 WP_214269660.1 Abi family protein -
  ACNMOQ_RS13975 rpsR 2810557..2810799 (-) 243 WP_016999205.1 30S ribosomal protein S18 -
  ACNMOQ_RS13980 ssbA 2810854..2811387 (-) 534 WP_016999204.1 single-stranded DNA-binding protein Machinery gene
  ACNMOQ_RS13985 rpsF 2811418..2811711 (-) 294 WP_016999203.1 30S ribosomal protein S6 -
  ACNMOQ_RS13990 ychF 2811830..2812930 (-) 1101 WP_016999202.1 redox-regulated ATPase YchF -
  ACNMOQ_RS13995 - 2812932..2813129 (-) 198 WP_016999201.1 DUF951 domain-containing protein -
  ACNMOQ_RS14000 - 2813153..2814037 (-) 885 WP_016999200.1 mechanosensitive ion channel family protein -
  ACNMOQ_RS14005 - 2814050..2814883 (-) 834 WP_070044817.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19815.49 Da        Isoelectric Point: 4.9532

>NTDB_id=1154890 ACNMOQ_RS13980 WP_016999204.1 2810854..2811387(-) (ssbA) [Mammaliicoccus lentus isolate M_lentus_chr]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQKNNNEFQNYGQDFGGNQQGQKAPSNQQQSNNNQQSSNP
FANANGPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1154890 ACNMOQ_RS13980 WP_016999204.1 2810854..2811387(-) (ssbA) [Mammaliicoccus lentus isolate M_lentus_chr]
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTTTACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTCGTTT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTTTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAGG
CGCAAACCAACGTCAATCAGGTAATGATAACCAATCATACAACCAGAAAAATAATAACGAATTCCAAAACTATGGACAAG
ACTTTGGCGGTAACCAACAAGGCCAAAAAGCACCTTCAAATCAACAACAGTCAAATAATAATCAACAATCAAGTAACCCA
TTTGCAAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.538

100

0.633
  ssb Latilactobacillus sakei subsp. sakei 23K

55.056

100

0.554
  ssb Vibrio cholerae strain A1552

35.359

100

0.362

Multiple sequence alignment