Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OGY80_RS08250 Genome accession   NZ_OX336253
Coordinates   1682709..1683596 (-) Length   295 a.a.
NCBI ID   WP_263340414.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1677709..1688596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS08220 ftsZ 1677973..1679172 (+) 1200 WP_003682480.1 cell division protein FtsZ -
  OGY80_RS08225 ispH 1679292..1680260 (-) 969 WP_263340401.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OGY80_RS08230 lspA 1680274..1680780 (-) 507 WP_263340404.1 signal peptidase II -
  OGY80_RS08235 glyQ 1680929..1681828 (-) 900 WP_263340407.1 glycine--tRNA ligase subunit alpha -
  OGY80_RS08240 yacG 1681910..1682092 (-) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  OGY80_RS08245 coaE 1682089..1682709 (-) 621 WP_263340410.1 dephospho-CoA kinase -
  OGY80_RS08250 pilD 1682709..1683596 (-) 888 WP_263340414.1 A24 family peptidase Machinery gene
  OGY80_RS08255 pilG 1683598..1684839 (-) 1242 WP_063069313.1 type II secretion system F family protein Machinery gene
  OGY80_RS08260 pilF 1684919..1686598 (-) 1680 WP_107810558.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32294.47 Da        Isoelectric Point: 8.3156

>NTDB_id=1154762 OGY80_RS08250 WP_263340414.1 1682709..1683596(-) (pilD) [Neisseria sp. Marseille-Q5346]
MFDSTYSAIDTLSVLAPFAIPLAVILGLLIGSFLNVVIYRTPMMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSRCPK
CKSPVKLWQNIPILSYVLLGGKCHSCKTAIGIRYPLIELLTGVLFGIVAWQYGWSWATIGGLILTAILIALTFIDADTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYALCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
MAALVGLVGALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide


Download         Length: 888 bp        

>NTDB_id=1154762 OGY80_RS08250 WP_263340414.1 1682709..1683596(-) (pilD) [Neisseria sp. Marseille-Q5346]
ATGTTTGATAGTACTTACTCTGCCATCGACACCCTCTCCGTTCTTGCGCCATTCGCTATTCCTTTAGCCGTTATTTTAGG
ATTACTGATTGGCAGCTTTCTAAACGTTGTCATTTATCGCACGCCGATGATGATGGAACGCGAATGGACACAATTTTCTA
AAGAACATTTGGGCATCGAGCTGACAGACGAAGAAAAACAGCCATTTAATCTGCGCAAACCGGACTCACGCTGCCCAAAA
TGCAAAAGCCCGGTCAAACTTTGGCAAAACATCCCTATCCTCAGCTATGTTTTACTGGGTGGGAAATGCCACTCCTGCAA
AACCGCTATCGGCATACGCTATCCGCTGATTGAGCTGCTGACAGGCGTCTTATTCGGTATTGTCGCGTGGCAATACGGCT
GGTCATGGGCGACTATTGGCGGATTAATTTTGACTGCCATATTGATTGCGCTGACCTTTATCGATGCCGATACGCAATAT
TTACCCGACAGCCTGACTCAGCCCCTAATTTGGATCGGCCTGCTGTTTAATCTTAATGACACATTCGTGCCCCTGCATTC
AGCCGTTTGGGGCGCAATCGCAGGCTATATGAGCCTTTATGCTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGTAATGGCGACTTCAAACTTTTGGCCGCGCTCGGGGCATGGCTGGGCGTAGGTATCTTGCCTGTTCTGATCTTC
ATGGCTGCCTTGGTCGGACTGGTGGGCGCACTCATTGCCCGCGTCGGTAAAGGTCAATATTTTGCTTTTGGTCCCAGCCT
TGCTGTAGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-132)

Type IV leader peptidase family (Peptidase_A24)

(142-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

71.025

95.932

0.681
  pilD Vibrio campbellii strain DS40M4

45.055

92.542

0.417
  pilD Vibrio cholerae strain A1552

46.538

88.136

0.41
  pilD Acinetobacter baumannii D1279779

46.215

85.085

0.393
  pilD Acinetobacter nosocomialis M2

46.215

85.085

0.393

Multiple sequence alignment