Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   OGY80_RS00320 Genome accession   NZ_OX336253
Coordinates   59591..60136 (-) Length   181 a.a.
NCBI ID   WP_263335781.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 54591..65136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS00295 - 55687..56256 (-) 570 WP_263335770.1 RNA 2'-phosphotransferase -
  OGY80_RS00300 trpE 56300..57775 (-) 1476 WP_263335771.1 anthranilate synthase component I -
  OGY80_RS00305 - 57911..58288 (-) 378 WP_107769431.1 hypothetical protein -
  OGY80_RS00310 - 58425..59045 (+) 621 WP_263335774.1 Smr/MutS family protein -
  OGY80_RS00315 - 59098..59586 (-) 489 WP_263335778.1 PilX family type IV pilin -
  OGY80_RS00320 pilK 59591..60136 (-) 546 WP_263335781.1 pilus assembly protein Machinery gene
  OGY80_RS00325 pilJ 60115..61050 (-) 936 WP_263335784.1 pilus assembly protein PilW Machinery gene
  OGY80_RS00330 pilV 61053..61700 (-) 648 WP_263335788.1 type IV pilus modification protein PilV -
  OGY80_RS00335 pilH 61713..62381 (-) 669 WP_263335791.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OGY80_RS00340 dnaB 62538..63944 (-) 1407 WP_263335793.1 replicative DNA helicase -
  OGY80_RS00345 - 64099..64680 (+) 582 WP_263335796.1 superoxide dismutase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20195.06 Da        Isoelectric Point: 8.7685

>NTDB_id=1154734 OGY80_RS00320 WP_263335781.1 59591..60136(-) (pilK) [Neisseria sp. Marseille-Q5346]
MRRPITLIKPDRQQGYALFIVLMMMVVIALLVVTATQSYNTEQRISTNDADRKLATTLAEAALREGENQIFDIEGKKTTF
TAKCEKGLCSTPNVKSNGDFTEEGSPTVDAWKRKCDKNLCIDANGTEYPLDKKSGIANNPRYIIEYLSKTTEGRITYRVT
AKAWGKNANTQVVLQSYVASE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1154734 OGY80_RS00320 WP_263335781.1 59591..60136(-) (pilK) [Neisseria sp. Marseille-Q5346]
ATGCGCCGACCGATCACTCTAATCAAACCTGACCGGCAGCAGGGCTATGCTTTGTTTATCGTCTTAATGATGATGGTCGT
CATCGCCCTGCTCGTGGTCACAGCTACCCAGTCCTACAATACTGAACAGCGTATCAGCACCAATGATGCCGACCGCAAAC
TGGCAACCACCCTAGCCGAAGCGGCACTGCGTGAAGGTGAAAATCAAATTTTTGATATTGAAGGTAAAAAGACTACTTTT
ACCGCAAAATGTGAAAAAGGTTTATGTTCCACACCAAACGTAAAATCCAATGGCGATTTTACTGAAGAAGGTAGCCCAAC
CGTAGATGCTTGGAAGCGCAAATGCGACAAAAACCTGTGTATTGACGCCAATGGTACGGAATATCCTTTAGATAAAAAAA
GCGGCATCGCAAACAATCCCCGCTACATCATCGAATATTTAAGTAAAACTACTGAAGGCCGAATCACCTACCGCGTTACC
GCCAAAGCATGGGGTAAGAATGCCAATACCCAAGTCGTTCTTCAGTCTTACGTTGCCAGCGAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(14-64)

Type IV pilus assembly protein PilX C-term (PilX)

(88-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

56.436

100

0.63

Multiple sequence alignment