Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OGY80_RS00335 Genome accession   NZ_OX336253
Coordinates   61713..62381 (-) Length   222 a.a.
NCBI ID   WP_263335791.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q5346     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 56713..67381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGY80_RS00305 - 57911..58288 (-) 378 WP_107769431.1 hypothetical protein -
  OGY80_RS00310 - 58425..59045 (+) 621 WP_263335774.1 Smr/MutS family protein -
  OGY80_RS00315 - 59098..59586 (-) 489 WP_263335778.1 PilX family type IV pilin -
  OGY80_RS00320 pilK 59591..60136 (-) 546 WP_263335781.1 pilus assembly protein Machinery gene
  OGY80_RS00325 pilJ 60115..61050 (-) 936 WP_263335784.1 pilus assembly protein PilW Machinery gene
  OGY80_RS00330 pilV 61053..61700 (-) 648 WP_263335788.1 type IV pilus modification protein PilV -
  OGY80_RS00335 pilH 61713..62381 (-) 669 WP_263335791.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OGY80_RS00340 dnaB 62538..63944 (-) 1407 WP_263335793.1 replicative DNA helicase -
  OGY80_RS00345 - 64099..64680 (+) 582 WP_263335796.1 superoxide dismutase -
  OGY80_RS00350 - 64904..66445 (+) 1542 WP_263335799.1 OFA family MFS transporter -
  OGY80_RS00355 - 66504..67349 (-) 846 WP_263335802.1 DUF817 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24629.97 Da        Isoelectric Point: 8.1066

>NTDB_id=1154736 OGY80_RS00335 WP_263335791.1 61713..62381(-) (pilH) [Neisseria sp. Marseille-Q5346]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPVKIKSDGSPNN
GCDSKYAGNGMLAYADKNEDLRYQNDTVDLSIRSIILNGNTDKVEYSFNYIPIGTERPALSASASKEVWWRFLPNGTFGH
STDGKNYQFSDGHIKISLTDKSAADAETKKARATVLLINGNGHVEICAKNDERKMCEYSSKE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1154736 OGY80_RS00335 WP_263335791.1 61713..62381(-) (pilH) [Neisseria sp. Marseille-Q5346]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCCGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCGGCATCGCAAGCAGAGCAAATTGCAAATCTGCTGCGCTTCG
CGCGGAATGAAGCCGTCCGTCTCAATCTTCCCGTTTACATCTGTCCGGTCAAAATTAAATCCGATGGCTCGCCCAATAAT
GGTTGCGATTCCAAATATGCCGGTAATGGTATGTTGGCCTACGCCGATAAAAACGAAGACTTACGCTATCAAAACGACAC
AGTCGATTTATCTATCCGCTCCATTATCCTTAATGGAAATACCGACAAAGTGGAATACAGCTTCAACTATATCCCTATCG
GTACTGAACGTCCTGCCCTCTCGGCCTCAGCTTCAAAAGAAGTCTGGTGGAGATTTCTTCCTAATGGTACATTTGGCCAT
TCAACCGATGGTAAGAATTATCAATTTTCAGACGGCCACATCAAAATCAGCCTGACGGATAAATCCGCCGCCGATGCTGA
AACCAAGAAAGCCCGTGCTACCGTACTTTTAATCAATGGTAATGGGCATGTCGAAATCTGTGCTAAAAACGATGAGCGCA
AAATGTGCGAATACTCTTCCAAAGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type II transport protein GspH (GspH)

(43-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

54.054

100

0.541

Multiple sequence alignment