Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | MIT1002_RS14835 | Genome accession | NZ_OX335040 |
| Coordinates | 3430879..3431772 (+) | Length | 297 a.a. |
| NCBI ID | WP_156078732.1 | Uniprot ID | - |
| Organism | Alteromonas macleodii isolate Alteromonas macleodii 83-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3425879..3436772
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MIT1002_RS14810 (ALT831_02996) | ampD | 3426411..3426950 (-) | 540 | WP_101565567.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| MIT1002_RS14815 (ALT831_02997) | - | 3427134..3427652 (+) | 519 | WP_014950400.1 | retropepsin-like aspartic protease family protein | - |
| MIT1002_RS14820 (ALT831_02998) | nadC | 3427685..3428539 (+) | 855 | WP_014977217.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| MIT1002_RS14825 (ALT831_02999) | - | 3429109..3429546 (+) | 438 | WP_156078730.1 | pilin | - |
| MIT1002_RS14830 (ALT831_03000) | pilC | 3429618..3430826 (+) | 1209 | WP_156078731.1 | type II secretion system F family protein | Machinery gene |
| MIT1002_RS14835 (ALT831_03001) | pilD | 3430879..3431772 (+) | 894 | WP_156078732.1 | prepilin peptidase | Machinery gene |
| MIT1002_RS14840 (ALT831_03002) | coaE | 3431791..3432402 (+) | 612 | WP_075176907.1 | dephospho-CoA kinase | - |
| MIT1002_RS14845 (ALT831_03003) | zapD | 3432646..3433398 (+) | 753 | WP_039227984.1 | cell division protein ZapD | - |
| MIT1002_RS14850 (ALT831_03004) | yacG | 3433532..3433759 (+) | 228 | WP_014950407.1 | DNA gyrase inhibitor YacG | - |
| MIT1002_RS14855 (ALT831_03005) | - | 3433979..3434851 (+) | 873 | WP_039227982.1 | aspartoacylase | - |
| MIT1002_RS14860 (ALT831_03006) | - | 3434939..3436228 (-) | 1290 | WP_014950409.1 | methyl-accepting chemotaxis protein | - |
| MIT1002_RS14865 (ALT831_03007) | - | 3436238..3436606 (-) | 369 | WP_014950410.1 | response regulator | - |
Sequence
Protein
Download Length: 297 a.a. Molecular weight: 32930.98 Da Isoelectric Point: 7.0543
>NTDB_id=1154694 MIT1002_RS14835 WP_156078732.1 3430879..3431772(+) (pilD) [Alteromonas macleodii isolate Alteromonas macleodii 83-1]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGEPTPNDKNSSAKEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLRGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGEPTPNDKNSSAKEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLRGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL
Nucleotide
Download Length: 894 bp
>NTDB_id=1154694 MIT1002_RS14835 WP_156078732.1 3430879..3431772(+) (pilD) [Alteromonas macleodii isolate Alteromonas macleodii 83-1]
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAATGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGAGCCGACACCTAATGATAAAAACTCATCAGCGAAAGAAGAAGTATTCAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAGATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAGAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGATACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGCTTGTGGTCTGTCTACTGGCTATTTAAGCTTGCCACTG
GCAAAGAAGGCATGGGCTATGGTGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTACCTTG
ATTACGTACTTTAG
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAATGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGAGCCGACACCTAATGATAAAAACTCATCAGCGAAAGAAGAAGTATTCAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAGATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAGAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGATACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTATC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACCTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTGGGGTTACTGTTGAGCACGCAACACATTTTTGTAGG
CACCACCGACGCTATTATTGGCGCAGCGGCGGGTTATTTAAGCTTGTGGTCTGTCTACTGGCTATTTAAGCTTGCCACTG
GCAAAGAAGGCATGGGCTATGGTGATTTCAAGCTGCTCGCCGCACTTGGCGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGTGCAATTGCAGGCATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTACCTTG
ATTACGTACTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.439 |
95.96 |
0.532 |
| pilD | Vibrio campbellii strain DS40M4 |
53.448 |
97.643 |
0.522 |
| pilD | Acinetobacter baumannii D1279779 |
50.538 |
93.939 |
0.475 |
| pilD | Acinetobacter nosocomialis M2 |
50.179 |
93.939 |
0.471 |
| pilD | Neisseria gonorrhoeae MS11 |
47.566 |
89.899 |
0.428 |