Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VPUCM_RS05520 Genome accession   NZ_CP007004
Coordinates   1199760..1202018 (+) Length   752 a.a.
NCBI ID   WP_025441577.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus UCM-V493     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1194760..1207018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPUCM_RS05495 (VPUCM_1089) - 1195048..1195617 (-) 570 WP_005488461.1 PilZ domain-containing protein -
  VPUCM_RS05500 (VPUCM_1090) lolC 1195882..1197090 (+) 1209 WP_038398320.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  VPUCM_RS05505 (VPUCM_1091) lolD 1197083..1197790 (+) 708 WP_020904029.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VPUCM_RS05510 (VPUCM_1092) lolE 1197793..1199037 (+) 1245 WP_015296461.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  VPUCM_RS05515 (VPUCM_1093) - 1199242..1199751 (-) 510 WP_005456245.1 DUF2062 domain-containing protein -
  VPUCM_RS05520 (VPUCM_1094) comEC 1199760..1202018 (+) 2259 WP_025441577.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VPUCM_RS05525 (VPUCM_1095) msbA 1202050..1203798 (+) 1749 WP_025441578.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  VPUCM_RS05530 (VPUCM_1096) lpxK 1203804..1204811 (+) 1008 WP_025441579.1 tetraacyldisaccharide 4'-kinase -
  VPUCM_RS05535 (VPUCM_1097) - 1204792..1204971 (+) 180 WP_005378451.1 Trm112 family protein -
  VPUCM_RS05540 (VPUCM_1098) kdsB 1204971..1205726 (+) 756 WP_005456221.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84801.31 Da        Isoelectric Point: 9.5229

>NTDB_id=115447 VPUCM_RS05520 WP_025441577.1 1199760..1202018(+) (comEC) [Vibrio parahaemolyticus UCM-V493]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITAGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVIAIKQVNSHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GSGVVARAVVTKDSHWVIRTSSSWRESIIQTVERDISRLEHFALIKALAFADRTGLTKEDWQSLRDSGLLHLVSISGLHI
GMALTFGFALGGLIRLAMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYIALKYWLVHWSPWRVLLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVQDSKEGRLGKLRILLLTQLILSLLIVPISGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWYLLDIFLVPLSWSVRYAIGTWQPISAEWTFFIAVVSAVLVLRHVMPRYVWMFVC
VIVVMTGLFPKQDNQTWRIDVLDVGHGLAVLVEKEGRVLLYDTGKAWQNGSIAEQVIRPVLHRRGYSIVDTMILSHADND
HAGGRKVIEQYFSPKHKLSSQSFLHYQPCIAEETWKWQGLNMEVLWPPKPVVRAYNPHSCVISLEAPSTGFKMLFTGDIE
AISEWILLREPEKLRSDVMLVPHHGSKSSSNPKFINVVEPSLAIASTAKLNQWGMPAPEVVQAYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=115447 VPUCM_RS05520 WP_025441577.1 1199760..1202018(+) (comEC) [Vibrio parahaemolyticus UCM-V493]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCGCTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGTGGGCTTTATGGTTGTCATCGTTCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCACGGATATGAAGGTGTCATAGCGATAAAACA
AGTGAATTCTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGTTTCGACGCAGAAAAGCAGTCAATG
GGAAGTGGTGTTGTTGCTAGAGCGGTCGTAACTAAAGATTCACACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAGTC
GATTATTCAAACTGTTGAGCGTGATATTTCTCGCCTTGAGCACTTTGCTCTAATCAAAGCACTGGCTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTCTCTGCGTGACAGCGGATTACTGCATCTTGTATCGATTTCTGGTTTACACATT
GGGATGGCATTGACGTTTGGGTTCGCCCTTGGTGGGCTCATTCGGCTTGCTATGCCGCGATATTGGTTTCTACCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATATTGCTTTGAAGTATTGGCTTGTGCATTGGAGCCCATGGCGCGTACTGTTACTGGCCGTGGCGTTGCAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCGGTTAA
CACAGTGCAAGACTCGAAGGAAGGTCGGTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATACTGAGCTTATTGA
TTGTCCCGATCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATTGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTA
TTTGCTTGACATATTCCTGGTTCCACTAAGTTGGTCGGTTCGATATGCCATAGGAACTTGGCAACCCATTAGTGCCGAGT
GGACATTTTTTATTGCTGTAGTGAGTGCCGTGCTCGTTTTAAGACATGTTATGCCTCGTTACGTTTGGATGTTTGTCTGT
GTAATTGTTGTGATGACAGGGTTGTTTCCTAAGCAAGATAACCAAACTTGGCGTATTGATGTGCTTGATGTCGGGCATGG
GTTGGCGGTGCTGGTTGAAAAAGAGGGTAGAGTTTTACTCTATGATACGGGCAAAGCTTGGCAAAACGGCAGTATAGCTG
AGCAAGTGATTAGGCCAGTACTGCATCGCAGAGGCTACTCAATTGTCGATACGATGATTTTAAGTCATGCCGATAATGAC
CATGCTGGCGGCCGAAAAGTGATAGAGCAGTACTTTTCACCTAAACACAAACTAAGCAGCCAGAGCTTTTTACATTATCA
GCCTTGCATCGCTGAGGAGACATGGAAGTGGCAAGGGTTGAACATGGAGGTACTTTGGCCTCCTAAGCCTGTTGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGCCCCTAGTACAGGTTTTAAAATGTTGTTTACTGGTGATATCGAA
GCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGCTAGTGCCGCATCATGGAAGCAA
AAGCTCTTCTAACCCTAAGTTTATCAACGTTGTTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCCGCACCTGAAGTCGTTCAGGCCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGTGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

98.271

100

0.983
  comEC Vibrio campbellii strain DS40M4

66.622

100

0.666
  comEC Vibrio cholerae strain A1552

41.083

100

0.414

Multiple sequence alignment