Detailed information NTG1154240

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: Q0V31_RS12920
• Genome accession: NZ_OX044366
• Coordinates: 2753178..2755394 (+)
• Length: 738 a.a.
• NCBI ID: WP_298188185.1
• Uniprot ID: -
• Organism: MAG: uncultured Pseudomonas sp. isolate AG_MB4
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2748178..2760394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q0V31_RS12890	-	2748279..2748581 (-)	303	WP_298188179.1	phosphodiesterase	-
Q0V31_RS12895	-	2748593..2749174 (-)	582	WP_298188180.1	PilZ domain-containing protein	-
Q0V31_RS12900	-	2749269..2750519 (+)	1251	WP_298188181.1	lipoprotein-releasing ABC transporter permease subunit	-
Q0V31_RS12905	lolD	2750527..2751210 (+)	684	WP_298188182.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
Q0V31_RS12910	-	2751210..2752454 (+)	1245	WP_298188183.1	lipoprotein-releasing ABC transporter permease subunit	-
Q0V31_RS12915	-	2752510..2753043 (-)	534	WP_298188184.1	DUF2062 domain-containing protein	-
Q0V31_RS12920	comA	2753178..2755394 (+)	2217	WP_298188185.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
Q0V31_RS12925	exbB	2755473..2756105 (+)	633	WP_298188186.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
Q0V31_RS12930	-	2756102..2756530 (+)	429	WP_298188187.1	biopolymer transporter ExbD	-
Q0V31_RS12935	lpxK	2756544..2757545 (+)	1002	WP_298188188.1	tetraacyldisaccharide 4'-kinase	-
Q0V31_RS12940	-	2757607..2757792 (+)	186	WP_090238153.1	Trm112 family protein	-
Q0V31_RS12945	kdsB	2757793..2758557 (+)	765	WP_298188189.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
Q0V31_RS12950	-	2758557..2759021 (+)	465	WP_298188190.1	low molecular weight protein-tyrosine-phosphatase	-
Q0V31_RS12955	murB	2759018..2760037 (+)	1020	WP_298188191.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 80298.67 Da
• Isoelectric Point: 10.8255

>NTDB_id=1154240 Q0V31_RS12920 WP_298188185.1 2753178..2755394(+) (comA) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
MRLGILTLVAGLLTLRFLPALPPFWLLALLPVVGLMLLPYRSYPIALFLFGFTWSCVSAQWALDQRLAHALDARTLWLQG
QVVGLPEVSEGVVRFQLQRPVSRRAALPERLRLSWYGGPVLQAGQTWRLAVRLKRPHGLVNPQAFDYEAWLLAQRVGASG
TVKAGELIYPASGTGAWRDRLRQHLLATPAHGRAGALAALVLGDGSGLSTADWRVLQDTGTVHLMVISGQHIGLLATLLY
GLVAGLARLGWWPRRWPWLPCASALAFTGALAYGLLAGFEVPVQRACVMVGLVLLWRWRFRHLGVRLPVLLALLVVLLVE
PLASLQPGFWLSFGAVLLLVLIFSGRLGAWSWWRTLLRAQWGMAIGLLPLLLALGLPVSASGPLANVIAVPVVGLLVVPL
ALLGTLLLALPGLGPALLEIAGWVLDLLFELLARLAMWLPAWLPSALPFWAWLLVALGALVLLLPAALPMRSLGAVLLLP
LLFSPQQRPEYGRAEVLMLDVGQGLAVLVRTQGHDLLYDAGPRFGEFDTGERVVLPSLRALDVRGLDLLLLSHADNDHAG
GAVAIARGLPVRRVLSGEPDKLPRSLRADACGREHWQWDGVHFTTWQWPGAANGNQASCVLRIEANGERLWLTGDIDSQA
ERALLNSGLDMPAQWLLAPHHGSRSSSSAALLAQVAPAAVLISRGAHNAFGHPHAAVLARYRAQDMRLYDSVLHGAVRIR
LGAFEPAQGLREHARFWR

Nucleotide

• Length: 2217 bp

>NTDB_id=1154240 Q0V31_RS12920 WP_298188185.1 2753178..2755394(+) (comA) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
ATGCGCCTAGGGATATTAACGTTGGTGGCCGGGCTGTTGACGCTGCGCTTTCTTCCAGCCTTGCCGCCGTTCTGGCTGCT
GGCGCTGCTGCCGGTTGTGGGCTTGATGCTGCTGCCGTATCGCAGTTATCCCATCGCCTTATTTCTATTTGGTTTTACCT
GGTCCTGCGTGAGTGCACAGTGGGCGCTGGATCAGCGTCTGGCGCATGCATTGGACGCGCGCACCCTGTGGCTGCAGGGG
CAAGTGGTTGGCCTGCCAGAGGTCAGTGAGGGGGTGGTGCGTTTTCAGTTGCAGCGGCCGGTTTCACGCCGCGCGGCATT
GCCCGAACGGTTGCGTCTGTCTTGGTACGGCGGGCCTGTGTTGCAGGCGGGGCAGACCTGGCGCTTAGCCGTTCGCCTCA
AGCGCCCGCATGGCTTGGTCAATCCACAGGCATTTGATTATGAAGCCTGGTTGCTGGCGCAACGCGTCGGAGCCAGCGGC
ACGGTGAAGGCCGGTGAGCTGATTTATCCCGCCAGTGGCACCGGTGCCTGGCGTGACCGCTTGCGTCAGCACCTGCTGGC
AACCCCGGCACATGGCCGCGCGGGTGCACTGGCCGCCTTGGTGCTGGGGGATGGCTCGGGGCTGTCGACGGCAGACTGGC
GGGTGCTGCAGGACACCGGCACGGTGCACCTGATGGTCATCTCGGGCCAGCATATCGGTCTTTTAGCAACGCTGCTGTAT
GGGCTGGTTGCGGGGTTGGCGCGCTTGGGATGGTGGCCGCGGCGCTGGCCCTGGCTGCCCTGCGCCAGTGCGTTGGCTTT
TACCGGTGCATTGGCGTACGGCTTACTGGCAGGTTTCGAGGTGCCGGTGCAGCGTGCCTGCGTGATGGTCGGCCTGGTGT
TGTTATGGCGTTGGCGTTTCCGCCATCTGGGCGTCCGGTTGCCCGTCTTGCTGGCATTGCTTGTGGTGTTGCTAGTGGAG
CCGCTGGCCAGTTTGCAGCCAGGGTTCTGGTTGTCTTTTGGCGCGGTGTTGCTGTTAGTGCTGATCTTCAGTGGCCGCTT
AGGTGCCTGGTCTTGGTGGCGCACCCTGCTGCGTGCGCAGTGGGGGATGGCCATTGGTTTGCTGCCGTTATTGCTGGCGC
TGGGTTTGCCGGTGAGCGCCAGCGGGCCGTTGGCCAATGTGATCGCCGTGCCTGTCGTCGGCTTGTTGGTCGTACCGTTG
GCGCTGCTCGGCACACTCTTGCTGGCTTTGCCTGGTTTGGGGCCTGCGCTGCTCGAGATCGCAGGCTGGGTGTTGGACCT
GCTATTCGAGTTGCTTGCACGGCTTGCCATGTGGCTGCCTGCTTGGTTGCCCAGTGCGTTGCCATTCTGGGCCTGGCTGT
TGGTGGCGCTGGGTGCGTTGGTCTTGCTATTACCCGCTGCATTGCCGATGCGCAGTCTGGGTGCTGTATTGTTGCTGCCC
TTGTTGTTCAGCCCGCAGCAGCGGCCTGAGTATGGCCGGGCCGAGGTGTTGATGCTGGATGTCGGTCAGGGCCTTGCGGT
GCTGGTGCGTACCCAGGGGCACGACCTGCTGTATGACGCCGGCCCACGCTTTGGCGAGTTCGACACGGGGGAGCGGGTGG
TACTGCCATCGTTGCGCGCGTTGGATGTGCGCGGGCTAGATCTACTGTTGCTCAGCCATGCCGATAATGATCATGCCGGC
GGTGCCGTGGCGATAGCGCGTGGTTTGCCGGTTAGGCGTGTGCTCAGTGGGGAGCCTGACAAGTTGCCACGCTCGTTGCG
GGCTGACGCTTGCGGGCGTGAGCATTGGCAGTGGGATGGCGTGCACTTCACTACCTGGCAATGGCCGGGGGCGGCCAATG
GCAATCAGGCGTCCTGTGTGTTGCGCATCGAGGCTAACGGCGAGCGCCTGTGGCTGACCGGTGATATCGATAGCCAGGCC
GAGCGCGCCTTGCTTAACAGCGGTCTGGACATGCCAGCGCAGTGGTTGCTGGCCCCCCACCATGGCAGTCGCAGCTCGTC
TTCCGCTGCGCTGCTGGCACAGGTCGCGCCGGCGGCTGTGCTGATCTCCCGTGGTGCGCACAACGCTTTTGGCCACCCGC
ATGCTGCAGTGCTGGCTCGCTACCGTGCGCAGGATATGCGGCTGTATGACAGCGTTTTGCACGGCGCGGTACGGATTCGC
CTGGGTGCATTCGAGCCTGCACAGGGTTTGCGTGAACATGCACGGTTTTGGCGGTAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-681)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (200-465)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.759	97.425	0.65
comA	Ralstonia pseudosolanacearum GMI1000	35.904	100	0.404