Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   Q0V31_RS12925 Genome accession   NZ_OX044366
Coordinates   2755473..2756105 (+) Length   210 a.a.
NCBI ID   WP_298188186.1    Uniprot ID   -
Organism   MAG: uncultured Pseudomonas sp. isolate AG_MB4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2750473..2761105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0V31_RS12905 lolD 2750527..2751210 (+) 684 WP_298188182.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  Q0V31_RS12910 - 2751210..2752454 (+) 1245 WP_298188183.1 lipoprotein-releasing ABC transporter permease subunit -
  Q0V31_RS12915 - 2752510..2753043 (-) 534 WP_298188184.1 DUF2062 domain-containing protein -
  Q0V31_RS12920 comA 2753178..2755394 (+) 2217 WP_298188185.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q0V31_RS12925 exbB 2755473..2756105 (+) 633 WP_298188186.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Q0V31_RS12930 - 2756102..2756530 (+) 429 WP_298188187.1 biopolymer transporter ExbD -
  Q0V31_RS12935 lpxK 2756544..2757545 (+) 1002 WP_298188188.1 tetraacyldisaccharide 4'-kinase -
  Q0V31_RS12940 - 2757607..2757792 (+) 186 WP_090238153.1 Trm112 family protein -
  Q0V31_RS12945 kdsB 2757793..2758557 (+) 765 WP_298188189.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q0V31_RS12950 - 2758557..2759021 (+) 465 WP_298188190.1 low molecular weight protein-tyrosine-phosphatase -
  Q0V31_RS12955 murB 2759018..2760037 (+) 1020 WP_298188191.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22833.06 Da        Isoelectric Point: 9.1188

>NTDB_id=1154241 Q0V31_RS12925 WP_298188186.1 2755473..2756105(+) (exbB) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
MWELVKAGGWMMLPIILCSIAAAGIVAERLWTLRPSRITPPNLLGQVWKWIKEKKLNNQKLKELRANSPLGQILAAGLAN
SKHGREIMKECIQEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAALLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIRLVEVVQGDRDVDLGEDKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1154241 Q0V31_RS12925 WP_298188186.1 2755473..2756105(+) (exbB) [MAG: uncultured Pseudomonas sp. isolate AG_MB4]
GTGTGGGAACTGGTAAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTGTGTTCTATCGCTGCGGCCGGCATTGTTGC
CGAGCGCCTGTGGACGCTGCGGCCTAGTCGCATCACCCCACCCAACCTGCTCGGCCAGGTGTGGAAGTGGATCAAAGAGA
AAAAGCTCAATAACCAGAAGCTCAAGGAGCTGCGCGCCAACTCACCGTTGGGGCAGATTCTCGCGGCGGGTTTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTCAAGAGGCGGCCGCGCGGGTGATTCATGACCTGGAGCGCTACCT
CAATGCCCTAGGCACCATCGCCGGCATCGCGCCGCTGCTGGGTTTGCTTGGCACGGTGCTGGGTATGATCGAAATCTTCA
GCTCTTTTATGGGCTCGGGTATGGCCAATGCGGCGTTGCTCGCTGGCGGTATTTCCAAGGCGCTGATCACCACGGCTGCT
GGCCTGATGGTGGCCATTCCGGCACTGTTCTTCCATCGTTATCTGCAGCGCCGCGTCGATGAGTTGGTGGTCGGCATGGA
GCAGGAAGCGATTCGCCTGGTGGAAGTGGTGCAGGGTGACCGTGATGTCGATCTGGGCGAGGACAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

90

100

0.9

Multiple sequence alignment