Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   NB068_RS08160 Genome accession   NZ_OW969598
Coordinates   1626542..1626991 (+) Length   149 a.a.
NCBI ID   WP_250314628.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1627053..1638303 1626542..1626991 flank 62


Gene organization within MGE regions


Location: 1626542..1638303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS08160 comP 1626542..1626991 (+) 450 WP_250314628.1 type IV pilin protein Machinery gene
  NB068_RS08165 - 1627053..1628114 (-) 1062 WP_250314629.1 5'-nucleotidase -
  NB068_RS08170 - 1628689..1629746 (-) 1058 Protein_1580 IS5 family transposase -
  NB068_RS08175 - 1630026..1630670 (-) 645 WP_250314630.1 hypothetical protein -
  NB068_RS08180 - 1630671..1631102 (-) 432 WP_250314631.1 hypothetical protein -
  NB068_RS08185 - 1631113..1632225 (-) 1113 WP_250314632.1 hypothetical protein -
  NB068_RS08190 - 1632241..1635255 (-) 3015 WP_250314970.1 DUF3418 domain-containing protein -
  NB068_RS08195 lpt3 1635357..1636934 (-) 1578 WP_250314971.1 lipooligosaccharide phosphoethanolamine transferase -
  NB068_RS08200 - 1637394..1637546 (+) 153 WP_003754616.1 hypothetical protein -
  NB068_RS08205 - 1637617..1638303 (+) 687 WP_250314633.1 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16755.45 Da        Isoelectric Point: 8.8099

>NTDB_id=1153551 NB068_RS08160 WP_250314628.1 1626542..1626991(+) (comP) [Neisseria sp. Marseille-Q6792]
MTDNRGFTLVELISAVLILSVLALIAYPSYRNYIEKARISAVRSALLENAHFMEKFYLQNGTFKQTSTKWPKLPIQEAEG
FCIRLNGVTRGALDSKFMLKAVAIDKNKEPRIIKMNENLVTFVCEGSASSCDDGLDYFRGNDKGCTLFK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1153551 NB068_RS08160 WP_250314628.1 1626542..1626991(+) (comP) [Neisseria sp. Marseille-Q6792]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGCAGTTTTGATATTGTCTGTACTTGCTCTAATTGCTTA
TCCAAGCTACCGTAATTATATTGAAAAGGCTAGAATAAGTGCGGTACGCTCGGCTTTATTAGAGAATGCACATTTTATGG
AAAAGTTTTATCTACAAAATGGGACATTTAAGCAAACATCTACTAAGTGGCCAAAGTTACCGATTCAAGAGGCTGAGGGT
TTTTGTATTCGGTTGAATGGGGTTACGAGAGGTGCGTTGGACAGTAAGTTTATGTTGAAGGCTGTTGCCATAGATAAAAA
TAAAGAGCCTCGTATTATTAAGATGAATGAGAATTTGGTAACTTTTGTTTGTGAAGGATCTGCCAGTTCTTGTGATGATG
GATTAGATTATTTTAGGGGTAATGATAAGGGTTGTACATTATTTAAGTAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-106)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria meningitidis 8013

85.906

100

0.859
  comP Neisseria gonorrhoeae MS11

85.235

100

0.852
  comP Neisseria subflava NJ9703

48.993

100

0.49

Multiple sequence alignment