Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NB068_RS03360 Genome accession   NZ_OW969598
Coordinates   677203..677787 (-) Length   194 a.a.
NCBI ID   WP_250314053.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 672203..682787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS03315 - 672209..672427 (-) 219 WP_250314049.1 hypothetical protein -
  NB068_RS03330 yaaA 672846..673625 (-) 780 WP_050896696.1 peroxide stress protein YaaA -
  NB068_RS03335 dapC 673781..674968 (-) 1188 WP_250314050.1 succinyldiaminopimelate transaminase -
  NB068_RS03340 dut 675045..675497 (-) 453 WP_250314051.1 dUTP diphosphatase -
  NB068_RS03345 - 675642..676352 (+) 711 WP_250314906.1 AzlC family ABC transporter permease -
  NB068_RS03350 - 676349..676657 (+) 309 WP_250314052.1 AzlD family protein -
  NB068_RS03355 pilL 676728..677201 (-) 474 WP_250314907.1 PilX family type IV pilin Machinery gene
  NB068_RS03360 pilK 677203..677787 (-) 585 WP_250314053.1 pilus assembly protein Machinery gene
  NB068_RS03365 pilJ 677766..678692 (-) 927 WP_250314054.1 PilW family protein Machinery gene
  NB068_RS03370 pilI 678689..679300 (-) 612 WP_250314055.1 type IV pilus modification protein PilV Machinery gene
  NB068_RS03375 pilH 679324..679992 (-) 669 WP_250314908.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NB068_RS03380 dnaB 680149..681555 (-) 1407 WP_250314056.1 replicative DNA helicase -
  NB068_RS03385 - 681719..682300 (+) 582 WP_250314057.1 superoxide dismutase -
  NB068_RS03390 - 682365..682697 (-) 333 WP_250314058.1 general secretion pathway protein GspG -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21602.58 Da        Isoelectric Point: 5.9837

>NTDB_id=1153530 NB068_RS03360 WP_250314053.1 677203..677787(-) (pilK) [Neisseria sp. Marseille-Q6792]
MRKQNALMKVSLPYRQKGFALFIVLMVMIVVAFLVVIAAQSYNTEQRISANDSDRKLALSLAEAALRDGELHVLDLEEKE
VTFSENCTDGLCTAPDVRTTTGPNEKFGNITVEGNPKVEAWKRFCPNNSANLCIDQGKEYGKGVEGVSKMPRYIIEYLGE
ENSRNVYRVTAKAWGKNANTAVVLQSYVSNNDEQ

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1153530 NB068_RS03360 WP_250314053.1 677203..677787(-) (pilK) [Neisseria sp. Marseille-Q6792]
ATGCGCAAACAGAACGCTTTAATGAAAGTTTCACTCCCTTACAGACAGAAAGGGTTTGCATTATTCATCGTTTTGATGGT
GATGATTGTAGTAGCTTTCCTGGTTGTTATTGCCGCTCAGTCTTACAATACCGAACAAAGGATAAGTGCCAATGATTCGG
ACAGGAAACTGGCATTGTCTTTAGCAGAAGCCGCATTGAGGGATGGTGAACTTCATGTTTTGGATTTGGAAGAGAAAGAA
GTTACATTTAGTGAAAATTGTACAGACGGGTTGTGCACAGCTCCGGATGTACGGACGACTACCGGTCCTAATGAGAAATT
CGGCAATATTACGGTTGAAGGCAATCCTAAGGTTGAAGCATGGAAGCGTTTTTGCCCTAATAATTCGGCAAATCTCTGCA
TCGACCAAGGAAAGGAATATGGAAAAGGGGTAGAGGGTGTTAGTAAGATGCCGCGTTACATTATCGAGTATCTGGGTGAA
GAAAATAGTCGAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCTAATACTGCGGTCGTCCTTCAATCTTA
TGTAAGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(89-188)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

71.921

100

0.753

Multiple sequence alignment