Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NB068_RS03375 Genome accession   NZ_OW969598
Coordinates   679324..679992 (-) Length   222 a.a.
NCBI ID   WP_250314908.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 674324..684992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS03340 dut 675045..675497 (-) 453 WP_250314051.1 dUTP diphosphatase -
  NB068_RS03345 - 675642..676352 (+) 711 WP_250314906.1 AzlC family ABC transporter permease -
  NB068_RS03350 - 676349..676657 (+) 309 WP_250314052.1 AzlD family protein -
  NB068_RS03355 pilL 676728..677201 (-) 474 WP_250314907.1 PilX family type IV pilin Machinery gene
  NB068_RS03360 pilK 677203..677787 (-) 585 WP_250314053.1 pilus assembly protein Machinery gene
  NB068_RS03365 pilJ 677766..678692 (-) 927 WP_250314054.1 PilW family protein Machinery gene
  NB068_RS03370 pilI 678689..679300 (-) 612 WP_250314055.1 type IV pilus modification protein PilV Machinery gene
  NB068_RS03375 pilH 679324..679992 (-) 669 WP_250314908.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NB068_RS03380 dnaB 680149..681555 (-) 1407 WP_250314056.1 replicative DNA helicase -
  NB068_RS03385 - 681719..682300 (+) 582 WP_250314057.1 superoxide dismutase -
  NB068_RS03390 - 682365..682697 (-) 333 WP_250314058.1 general secretion pathway protein GspG -
  NB068_RS03395 cysT 682883..683719 (+) 837 Protein_663 sulfate ABC transporter permease subunit CysT -
  NB068_RS03400 cysW 684101..684922 (+) 822 WP_250314059.1 sulfate ABC transporter permease subunit CysW -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24933.51 Da        Isoelectric Point: 9.5253

>NTDB_id=1153533 NB068_RS03375 WP_250314908.1 679324..679992(-) (pilH) [Neisseria sp. Marseille-Q6792]
MYIRRQQGFTLIELLIVMVIATIMAMIAFPSMSQWIASRRVATQAEQIANLLRFSRGEAVRLNIPVYICPVQVKKDGTAN
NKCDFSKKEQGMLAFGDKNGDKAYGGDTVDVSIRSVVLNDDIKDKRINYTFNHVAFGQAQPVADRVVWTFNQNGTFGYTN
DQNLTSKSRFSYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDQRTMCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1153533 NB068_RS03375 WP_250314908.1 679324..679992(-) (pilH) [Neisseria sp. Marseille-Q6792]
ATGTATATACGAAGACAACAAGGTTTCACGCTGATAGAGCTGCTCATTGTGATGGTTATTGCAACCATTATGGCAATGAT
AGCTTTCCCCAGTATGAGTCAATGGATTGCATCGCGTCGCGTTGCAACTCAGGCGGAGCAGATTGCCAATCTCTTGCGTT
TTTCAAGGGGAGAGGCGGTCCGGCTCAATATTCCTGTCTATATCTGTCCTGTTCAGGTTAAAAAAGACGGTACGGCCAAC
AATAAATGTGACTTCAGCAAGAAGGAGCAGGGAATGTTGGCTTTCGGCGATAAGAATGGCGATAAGGCATACGGAGGGGA
TACGGTAGATGTTTCCATCCGCAGTGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAACCATG
TCGCTTTCGGTCAAGCCCAGCCGGTTGCAGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAC
GACCAGAATCTTACAAGCAAATCCAGATTTTCTTATTCCGACGGTTATATTCAAATTGTTCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCAGCCGTAGTCTTGATTGACAGCAGTGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCAGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

77.376

99.55

0.77

Multiple sequence alignment