Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NB068_RS01050 Genome accession   NZ_OW969598
Coordinates   199122..199925 (-) Length   267 a.a.
NCBI ID   WP_127242467.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 194122..204925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS01035 - 194487..195101 (+) 615 WP_250313746.1 DNA glycosylase -
  NB068_RS01040 trpB 195335..196537 (+) 1203 WP_250313747.1 tryptophan synthase subunit beta -
  NB068_RS01045 comA 196669..198888 (+) 2220 WP_250314880.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NB068_RS01050 comL 199122..199925 (-) 804 WP_127242467.1 outer membrane protein assembly factor BamD Machinery gene
  NB068_RS01055 rluD 199924..201048 (+) 1125 WP_250313748.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NB068_RS01060 - 201201..202148 (-) 948 WP_250313749.1 bile acid:sodium symporter family protein -
  NB068_RS01065 - 202225..202449 (-) 225 WP_250313750.1 hypothetical protein -
  NB068_RS01070 pgeF 202602..203381 (+) 780 WP_250313751.1 peptidoglycan editing factor PgeF -
  NB068_RS01075 lptE 203433..203912 (+) 480 WP_061693184.1 LPS assembly lipoprotein LptE -
  NB068_RS01080 holA 203914..204912 (+) 999 WP_250313752.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30775.80 Da        Isoelectric Point: 8.5650

>NTDB_id=1153523 NB068_RS01050 WP_127242467.1 199122..199925(-) (comL) [Neisseria sp. Marseille-Q6792]
MKKILLTVSLGLALSACATKGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHAQQSQLDTAY
AYYKDDEKDKALAAIDRFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTHRV
LEANFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1153523 NB068_RS01050 WP_127242467.1 199122..199925(-) (comL) [Neisseria sp. Marseille-Q6792]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACCAAAGGTACGGTAGATAAAGATGC
CCAGATTACCCAAGACTGGAGTGTGGAAAAACTCTATGCCGAAGCCCAGGACGAGCTGAACAGCAGCAATTATACGCGAG
CTGTCAAATTATACGAAATCTTGGAATCGCGCTTCCCTACCAGCCGCCATGCCCAGCAATCCCAACTGGATACGGCATAC
GCCTACTATAAAGACGATGAGAAGGATAAGGCGCTGGCCGCCATTGACCGCTTCCGCCGACTTCACCCTCAACACCCGAA
TATGGACTACGCGCTGTACCTGCGCGGTTTGGTACTGTTCAACGAAGATCAGTCTTTCTTGAACAAGCTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTATCAGGCCTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTAGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGACACACACCGCGTT
TTGGAAGCCAACTTTCCGAAAAGCCCGTTTTTGACGCACGCCTGGCAGCCCGACGATATGCCTTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

97.378

100

0.974
  comL Neisseria meningitidis MC58

96.629

100

0.966

Multiple sequence alignment