Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NB068_RS01045 Genome accession   NZ_OW969598
Coordinates   196669..198888 (+) Length   739 a.a.
NCBI ID   WP_250314880.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 191669..203888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS01015 - 191751..192206 (-) 456 WP_250313742.1 hypothetical protein -
  NB068_RS01020 - 192317..192562 (-) 246 Protein_202 GTP pyrophosphokinase -
  NB068_RS01025 rsmA 192537..193316 (-) 780 WP_250313744.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  NB068_RS01030 - 193555..194457 (+) 903 WP_250313745.1 DMT family transporter -
  NB068_RS01035 - 194487..195101 (+) 615 WP_250313746.1 DNA glycosylase -
  NB068_RS01040 trpB 195335..196537 (+) 1203 WP_250313747.1 tryptophan synthase subunit beta -
  NB068_RS01045 comA 196669..198888 (+) 2220 WP_250314880.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NB068_RS01050 comL 199122..199925 (-) 804 WP_127242467.1 outer membrane protein assembly factor BamD Machinery gene
  NB068_RS01055 rluD 199924..201048 (+) 1125 WP_250313748.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NB068_RS01060 - 201201..202148 (-) 948 WP_250313749.1 bile acid:sodium symporter family protein -
  NB068_RS01065 - 202225..202449 (-) 225 WP_250313750.1 hypothetical protein -
  NB068_RS01070 pgeF 202602..203381 (+) 780 WP_250313751.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80014.71 Da        Isoelectric Point: 10.2082

>NTDB_id=1153522 NB068_RS01045 WP_250314880.1 196669..198888(+) (comA) [Neisseria sp. Marseille-Q6792]
MFRRWFLPCWVVGVAASFALPVVPHWPFWLAAFAVFAVSARWFGFAGLMLCVLAGAAYGVFRTEAALSSQWRAEAVSGVP
LTVEVADMPRSDGRRVQFAAKAVDSGGRTFDLLLSDYKRREWAVGSRWRITARVHPVVGELNLRGLNREAWALSNGIGGA
GTVGADRVLLHDGSGWGIAVWRSRISRNWRQADADGGLSDGIGLMRALSVGEQSALRPELWQAFRPLGLTHLVSISGLHV
TMVAVLFAWLAKRLLACSPRLPARPRVWVLAAGCAGALFYALLAGFSVPTQRSVLMLAAFAWAWRRGRLSAWATWWQALA
AVLLFDPLAVLGVGTWLSFGLVAALIWACSGRLHEGKRQTALRGQWAASVLSLVLLGYLFASLPLVSPLVNAVAIPWFSW
VLTPLALLGSVVPFAPLQQLGAFLAEYTLRFLVWLADVSPEFAVASAPLPLLVLAVCAALLLLLPRGLGLRPWAVLLLAG
FVFYRPPSVPENEAAVTVWDAGQGLSVSVQTANHHLLFDTGTALAAQTGIVPSLNAAGVRRLDKLVLSHHDSDHDGGFQA
VGKIPNGGIYAGQPEFYEGARHCAEQRWQWDGVDFEFLRPSERKNIDDNGKSCVLRVVAGGAALLVTGDLDTKGEAELVK
KYGSNLYSQVLVLGHHGSNTSSSGVFLNAVSPEYAVASSGYANAYKHPTEAVQNRVRAHGIKLLRTDLSGALQFGLGRGG
VKAQRLRGYKFYWQKKPFE

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=1153522 NB068_RS01045 WP_250314880.1 196669..198888(+) (comA) [Neisseria sp. Marseille-Q6792]
GTGTTCCGTCGTTGGTTTTTGCCGTGTTGGGTCGTCGGCGTGGCGGCTTCGTTCGCACTGCCGGTTGTACCGCATTGGCC
GTTTTGGTTGGCGGCTTTTGCGGTTTTTGCTGTGTCTGCAAGGTGGTTTGGATTTGCCGGTTTGATGTTGTGTGTTTTGG
CGGGTGCTGCCTACGGTGTGTTCAGGACGGAGGCGGCATTGTCTTCCCAATGGCGGGCAGAGGCGGTTTCGGGTGTGCCG
TTGACGGTGGAAGTGGCGGATATGCCGAGGTCGGACGGGCGGCGCGTGCAGTTTGCGGCAAAGGCTGTGGACAGCGGTGG
TCGGACGTTTGATTTGCTGCTGTCGGACTACAAACGGCGCGAATGGGCGGTCGGGAGCAGATGGCGGATAACGGCACGTG
TGCACCCTGTCGTAGGAGAATTGAACCTTAGGGGGCTGAACCGTGAGGCGTGGGCATTATCCAACGGGATAGGCGGCGCG
GGGACGGTCGGTGCGGACAGGGTTTTGCTGCATGACGGAAGCGGTTGGGGGATTGCGGTTTGGCGCAGCCGCATCAGCCG
AAATTGGCGGCAGGCGGATGCGGACGGTGGGCTTTCAGACGGCATCGGGCTGATGCGCGCGTTGAGCGTGGGCGAACAGT
CGGCATTGCGCCCCGAATTGTGGCAGGCGTTCCGACCGTTGGGACTGACGCATCTGGTCAGTATTTCGGGTTTGCACGTT
ACGATGGTGGCGGTGCTGTTTGCGTGGCTGGCGAAGCGGCTGCTTGCCTGTTCCCCGCGCCTTCCCGCCCGGCCGCGCGT
GTGGGTTTTGGCGGCGGGGTGTGCAGGCGCGCTGTTTTACGCGCTGCTTGCCGGTTTTTCCGTGCCGACGCAGCGCAGCG
TTTTGATGTTGGCGGCGTTTGCGTGGGCGTGGCGCAGGGGAAGACTGTCGGCGTGGGCAACGTGGTGGCAGGCGTTGGCG
GCGGTGCTGCTGTTCGACCCTTTGGCGGTCTTGGGTGTGGGAACTTGGCTGTCTTTCGGTTTGGTGGCGGCCCTGATATG
GGCGTGTTCGGGGCGTTTGCACGAGGGGAAACGGCAAACTGCTTTGCGCGGGCAGTGGGCGGCTTCGGTGTTGTCGTTGG
TTTTGCTCGGTTATCTGTTTGCTTCGCTGCCTTTGGTCAGCCCTTTGGTCAATGCGGTGGCGATTCCGTGGTTTTCTTGG
GTGTTGACCCCGCTGGCGTTGCTGGGTTCGGTCGTGCCGTTTGCGCCTTTGCAACAGTTGGGGGCATTTTTGGCGGAATA
CACTTTGCGGTTTTTGGTGTGGCTTGCCGATGTGTCGCCCGAGTTTGCCGTTGCCTCCGCACCTTTGCCGCTGCTGGTGT
TGGCGGTGTGTGCCGCTTTGCTGTTGTTGCTGCCGCGCGGCTTGGGTTTGCGTCCGTGGGCGGTGTTGCTGTTGGCAGGG
TTTGTGTTTTACCGTCCGCCCAGCGTGCCGGAAAATGAGGCTGCGGTTACGGTTTGGGATGCGGGGCAGGGTTTGTCGGT
GTCGGTTCAGACGGCAAATCATCATCTTTTGTTTGACACCGGAACTGCATTGGCGGCACAGACGGGGATTGTGCCGAGCC
TGAATGCGGCGGGTGTCCGCCGTTTGGATAAGCTGGTTCTGTCGCATCACGACAGCGACCACGACGGCGGTTTTCAGGCA
GTCGGCAAGATACCGAACGGCGGGATTTATGCCGGACAGCCGGAATTTTATGAGGGGGCGCGGCATTGTGCGGAACAGCG
TTGGCAATGGGACGGCGTAGATTTCGAGTTTTTGAGGCCGTCTGAACGCAAAAACATCGATGATAATGGGAAAAGTTGTG
TTTTGCGTGTTGTGGCTGGTGGTGCGGCACTACTGGTAACGGGCGATTTGGATACGAAGGGCGAGGCGGAGTTGGTTAAA
AAATACGGCTCAAACCTGTACAGCCAGGTTTTGGTTTTGGGACATCACGGCAGCAATACGTCCTCGTCGGGCGTGTTCCT
CAATGCCGTCTCGCCCGAATATGCCGTTGCTTCAAGCGGTTATGCCAACGCCTACAAACATCCGACCGAAGCGGTACAGA
ACCGTGTCCGCGCACACGGCATCAAGTTGTTGCGGACGGATTTGTCGGGCGCGCTGCAATTCGGCTTGGGACGCGGCGGC
GTGAAGGCTCAACGTTTGAGAGGGTATAAATTCTATTGGCAGAAAAAACCGTTTGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(8-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-677)

Competence protein (Competence)

(208-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

95.805

100

0.958

Multiple sequence alignment