Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   RG26_RS18845 Genome accession   NZ_CP010119
Coordinates   3522342..3523079 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain C3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3517342..3528079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RG26_RS18815 (RG26_17770) yfiL 3517500..3517865 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  RG26_RS18820 (RG26_17775) aroF 3518075..3519145 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  RG26_RS18825 (RG26_17780) tyrA 3519156..3520277 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  RG26_RS18830 (RG26_17785) pheA 3520320..3521480 (-) 1161 WP_000200118.1 bifunctional chorismate mutase/prephenate dehydratase -
  RG26_RS30425 pheL 3521579..3521626 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  RG26_RS18835 (RG26_17790) raiA 3521730..3522071 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  RG26_RS18845 (RG26_17800) comL 3522342..3523079 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  RG26_RS18850 (RG26_17805) rluD 3523214..3524194 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RG26_RS18855 (RG26_17810) yfiH 3524191..3524922 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  RG26_RS18860 (RG26_17815) clpC 3525052..3527625 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=115296 RG26_RS18845 WP_000197686.1 3522342..3523079(-) (comL) [Escherichia coli strain C3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=115296 RG26_RS18845 WP_000197686.1 3522342..3523079(-) (comL) [Escherichia coli strain C3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment