Detailed information NTG0115297

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BAMY6614_RS03620
• Genome accession: NZ_CP006960
• Coordinates: 730105..731217 (+)
• Length: 370 a.a.
• NCBI ID: WP_007409910.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens UMAF6614
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 725105..736217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY6614_RS03600 (BAMY6614_03830)	rnpA	725817..726167 (-)	351	WP_004392944.1	ribonuclease P protein component	-
BAMY6614_RS19320	rpmH	726321..726455 (-)	135	WP_003178075.1	50S ribosomal protein L34	-
BAMY6614_RS03605 (BAMY6614_03840)	dnaA	727078..728418 (+)	1341	WP_004392913.1	chromosomal replication initiator protein DnaA	-
BAMY6614_RS03610 (BAMY6614_03845)	dnaN	728603..729739 (+)	1137	WP_029973052.1	DNA polymerase III subunit beta	-
BAMY6614_RS03615 (BAMY6614_03850)	rlbA	729874..730089 (+)	216	WP_004392910.1	ribosome maturation protein RlbA	-
BAMY6614_RS03620 (BAMY6614_03855)	recF	730105..731217 (+)	1113	WP_007409910.1	DNA replication/repair protein RecF	Machinery gene
BAMY6614_RS03625 (BAMY6614_03860)	remB	731235..731480 (+)	246	WP_004392908.1	extracellular matrix regulator RemB	-
BAMY6614_RS03630 (BAMY6614_03865)	gyrB	731537..733453 (+)	1917	WP_014720600.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
BAMY6614_RS03635 (BAMY6614_03870)	gyrA	733669..736128 (+)	2460	WP_025650119.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42430.36 Da
• Isoelectric Point: 7.0882

>NTDB_id=115297 BAMY6614_RS03620 WP_007409910.1 730105..731217(+) (recF) [Bacillus amyloliquefaciens UMAF6614]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide

• Length: 1113 bp

>NTDB_id=115297 BAMY6614_RS03620 WP_007409910.1 730105..731217(+) (recF) [Bacillus amyloliquefaciens UMAF6614]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAGTCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCACAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	94.324	100	0.943