Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   NBW44_RS04325 Genome accession   NZ_OW724079
Coordinates   857064..859031 (-) Length   655 a.a.
NCBI ID   WP_250307347.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 852064..864031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS04285 - 852237..852734 (-) 498 WP_250307343.1 GAF domain-containing protein -
  NBW44_RS04290 rpsA 852820..854022 (-) 1203 WP_075567746.1 30S ribosomal protein S1 -
  NBW44_RS04305 - 854397..854627 (-) 231 WP_075567747.1 DUF2969 domain-containing protein -
  NBW44_RS04310 pcp 854762..855406 (-) 645 WP_250307344.1 pyroglutamyl-peptidase I -
  NBW44_RS04315 - 855420..856343 (-) 924 WP_250307345.1 SP_0859 family membrane protein -
  NBW44_RS04320 - 856340..857029 (-) 690 WP_250307346.1 SP_0858 family membrane protein -
  NBW44_RS04325 amiA3 857064..859031 (-) 1968 WP_250307347.1 peptide ABC transporter substrate-binding protein Regulator
  NBW44_RS04330 - 859053..860075 (-) 1023 WP_250307348.1 branched-chain amino acid aminotransferase -
  NBW44_RS04335 parC 860203..862683 (-) 2481 WP_250307349.1 DNA topoisomerase IV subunit A -
  NBW44_RS04340 - 862871..863689 (-) 819 WP_250307350.1 aminoglycoside 6-adenylyltransferase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72675.16 Da        Isoelectric Point: 4.9479

>NTDB_id=1152599 NBW44_RS04325 WP_250307347.1 857064..859031(-) (amiA3) [Streptococcus sp. Marseille-Q3533]
MKTKKWMLTAGVVLSTAVLLVACGKADKEADAPTTFSYVYGVDPSSLDYSIATRTSTTDIIGNVVDGLLENDEYGNLVPS
LAEDWSVSQDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVTLIQNSIKGLNEYMTGETNDFSTVG
VKALDDYTVQYTLNAPESFWNSKVTSATMLPVNEEFLKASGKNYGAVSPSGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKVKLTYYDGSDQESLIRSFSSGVYTTARIFPSSSNFASTLEQYGDKITYSPQDSTSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQSGGKNFGDIAQAELVNYGDQWKGVE
LVDGKDTIYNPDKAKASFEKAKKELEAKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGSENVVIDVLQMTDNEKE
SITSQARVPAQKDYDLNSTGWAPSYQDPASYLNIMDPKTGSAMKHLGITKGKDKEVVAQLGLDEYKKLLDDAVSETNDLD
KRYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKEIVSAKEYQAALEKWQKEKL
DSNSKYQKELESHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1152599 NBW44_RS04325 WP_250307347.1 857064..859031(-) (amiA3) [Streptococcus sp. Marseille-Q3533]
ATGAAAACGAAAAAGTGGATGTTAACAGCAGGAGTGGTCCTGAGTACAGCAGTTCTTCTTGTGGCTTGTGGTAAAGCTGA
TAAAGAAGCAGATGCACCTACAACCTTCTCTTATGTCTATGGAGTAGACCCATCATCTTTGGACTACAGTATCGCAACTC
GTACTTCAACAACGGATATTATTGGTAACGTTGTTGATGGATTGTTGGAAAACGACGAATATGGAAATTTGGTTCCTTCA
CTAGCTGAGGATTGGAGTGTCTCACAAGACGGTTTGACTTATACTTATAAACTTCGTAAAGGAGTTAAATGGTATACATC
AGAGGGTGAAGAATATGCTGAAGTAACAGCGCATGACTTTGTTACTGGATTGAAACACGTAGCTGATGGGAAATCAGACG
GTGTCACTCTTATTCAAAACTCCATCAAGGGTTTGAATGAGTATATGACTGGTGAGACTAATGATTTCTCTACAGTTGGT
GTTAAGGCATTGGATGACTACACAGTCCAGTATACTCTTAATGCACCTGAAAGTTTCTGGAATTCGAAAGTAACCTCAGC
AACCATGTTGCCGGTAAACGAGGAATTCCTCAAAGCTTCAGGTAAGAACTACGGAGCAGTAAGTCCATCTGGAATTCTTT
ATAACGGTCCGTATATCTTAAAGACATTGACTTCAAAATCTTTAATCGAATACGAAAAGAACCCAAATTATTGGGATAAA
GAGAAGGTTAAAATTGAGAAAGTAAAATTGACCTACTATGATGGTTCAGACCAAGAATCATTAATCCGTAGCTTCTCTTC
AGGTGTTTATACAACAGCTCGTATCTTTCCAAGTAGTTCAAACTTTGCTTCTACATTGGAACAATACGGAGATAAAATCA
CATACAGTCCACAGGATTCAACTAGTTATTACTTTACCTTTAACGTAAACCGTCAATCTTACAATAAGACTGCGAAAACA
AGTGAAGAACAGAAAACTTCTACAAAAGAAGCGATGTTGAACAAGGACTTCCGTCAAGCAATCAACTTTGCCTTCAACCG
TCATTCATATGCTGCACAGCTCAATGGTGAAGATGGTGCGGACAAGATTATTCGTAACAGTCTAGTTCCAGATAACTTTG
TACAATCTGGTGGTAAAAACTTTGGTGACATCGCTCAAGCAGAATTGGTCAACTATGGAGACCAATGGAAAGGCGTTGAG
CTTGTAGACGGAAAAGATACCATCTACAATCCAGACAAAGCCAAAGCTTCATTTGAAAAAGCTAAGAAAGAATTGGAAGC
AAAAGGTGTAACCTTCCCAATTCATTTGGATGTTCCAGTTGAACAGACAGATACAATCGCTGTTCAACAAAGCAATTCCT
TCAAACAATCAATCGAGTCAACTCTTGGTTCTGAAAATGTCGTGATTGATGTCCTTCAGATGACCGATAACGAAAAGGAA
AGCATTACATCGCAAGCGCGTGTTCCAGCCCAAAAAGACTATGACTTGAACAGTACTGGATGGGCTCCAAGCTACCAAGA
CCCAGCAAGTTATCTTAATATCATGGATCCTAAGACTGGTTCTGCTATGAAACACCTTGGTATTACGAAAGGTAAAGACA
AGGAAGTAGTAGCTCAACTTGGTCTGGACGAATATAAGAAACTCTTGGATGATGCAGTTTCTGAAACAAACGATTTGGAC
AAGAGATATGAAAAATATGCTAAAGCTCAAGCATGGCTCACTGATAGTTCTCTCTTGATGCCAACAGCTTCATCAGGTGG
CTCACCAGTTGTCAGCAACGTCGTTCCATTCTCTAAACCATACTCACAAGTAGGTATTAAGGGTGATCCATATATCTTCA
AGGGAATGAAATTGCAAAAAGAAATTGTATCTGCTAAAGAATATCAAGCAGCTCTTGAAAAATGGCAAAAAGAAAAATTG
GATTCAAACAGTAAATATCAAAAAGAACTAGAAAGTCATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.273

100

0.527
  amiA Streptococcus salivarius strain HSISS4

52.128

100

0.524
  amiA3 Streptococcus thermophilus LMG 18311

51.667

100

0.521

Multiple sequence alignment