Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NBW44_RS01920 Genome accession   NZ_OW724079
Coordinates   366801..368759 (+) Length   652 a.a.
NCBI ID   WP_250306986.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 361801..373759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS01900 - 362253..362765 (+) 513 WP_250306982.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  NBW44_RS01905 - 362749..363399 (+) 651 WP_250306983.1 DUF1803 domain-containing protein -
  NBW44_RS01910 - 363438..364883 (-) 1446 WP_250306984.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  NBW44_RS01915 - 364989..366611 (+) 1623 WP_250306985.1 polysaccharide biosynthesis protein -
  NBW44_RS01920 amiA 366801..368759 (+) 1959 WP_250306986.1 peptide ABC transporter substrate-binding protein Regulator
  NBW44_RS01925 - 368905..369999 (+) 1095 WP_223333289.1 cystathionine gamma-synthase -
  NBW44_RS01930 - 370004..371170 (+) 1167 WP_250306987.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72485.57 Da        Isoelectric Point: 4.6724

>NTDB_id=1152588 NBW44_RS01920 WP_250306986.1 366801..368759(+) (amiA) [Streptococcus sp. Marseille-Q3533]
MKKSKAKYMTLAGVVLSAGLLLGACGNSTSSSKVYNYVYASDPSSLNYLLENRATTGDVATNLVDGLMENDQYGNYIPSL
AEDWTVSQDGLTYTYKLRKDAKWYTADGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVTGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLKQPEPYWNSKTTATILFPVNADFLNSKGDDFGKVDPANLLYNGPFILKSFTSKSVMEYKKNPNYWDAK
NVFVDEVKLTYYDGSDQDSLVRSFSEGVYSFARLYPNSSSFSGVKEKYKDNIIYSMQNATSYYYNFNLDRKSYNHTSKTT
DAEKTAQQEAVLNKSFRQAINFAYDRTAYGAQSQGEDGATKIIRNLLVPPSFVTLDGKDFGDVVASKMVNYGQVWQNMNF
ADAQDAYYNADKAKEVFAQAKKELEAKGVQFPIHLDLPVDQTFKKGVQEASSFKQSIESVLGADNVVIDIQMLTTEEMDS
IGYLANTAAQKDYDLYNGGWGPDYQDPSTYLDTLSLTSGGSLQNLGLEPGETNAKATAVGLDVYTKMLEEANAEQDLNKR
YDKYAEAQAWLVDSSLALPNVSQGGTPGLRRTVPFSAAFSQAGNKGVESYKYVKLQDKVVTTAEYEEARQKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1152588 NBW44_RS01920 WP_250306986.1 366801..368759(+) (amiA) [Streptococcus sp. Marseille-Q3533]
ATGAAAAAGTCTAAGGCAAAATACATGACGTTAGCAGGCGTCGTCTTAAGTGCTGGTTTGCTTCTGGGAGCTTGTGGTAA
TTCGACTAGCTCTTCTAAAGTATACAACTATGTATACGCAAGCGATCCTTCTAGTTTGAACTATCTCTTAGAAAACCGTG
CAACTACTGGTGATGTTGCTACAAACTTGGTAGATGGTTTGATGGAAAATGACCAATACGGGAACTACATTCCTTCATTG
GCAGAAGATTGGACTGTTTCCCAAGATGGTTTGACTTATACTTACAAACTTCGTAAGGACGCCAAATGGTATACAGCAGA
TGGTGAAGAGTATGCTCCAGTTACTGCGCAAGATTTTGTAACTGGTTTGAAATATGCTGCGGATAAAAAATCTGAAGCTC
TCTATCTCGTTCAAGATTCTGTTACTGGTTTAGATGATTATATAAACGGAAAAACAACAGACTTTTCAACAGTTGGAGTT
AAGGCTATTGATGATCAAACAGTGCAGTATACTTTGAAACAACCAGAACCTTACTGGAATTCAAAAACGACTGCAACCAT
TCTATTCCCAGTTAATGCTGACTTCTTGAATTCCAAAGGGGATGATTTTGGTAAAGTGGATCCAGCAAATCTTTTGTACA
ACGGTCCATTTATTCTCAAATCATTCACATCTAAATCTGTCATGGAATACAAGAAAAATCCAAATTACTGGGATGCTAAA
AATGTATTCGTAGATGAAGTTAAATTGACCTACTATGATGGCAGTGATCAAGATTCTCTAGTTCGTAGCTTTAGCGAGGG
AGTTTATAGCTTTGCTCGTCTCTATCCAAATAGCTCAAGCTTCTCAGGTGTGAAAGAGAAATATAAAGATAACATCATTT
ATAGTATGCAAAATGCGACATCCTACTATTATAACTTTAACCTAGATAGAAAATCATATAACCACACATCAAAGACGACA
GACGCTGAAAAGACAGCCCAACAAGAAGCCGTCTTAAACAAATCATTCCGTCAAGCTATCAACTTTGCCTATGACCGCAC
TGCTTATGGTGCCCAATCTCAAGGGGAAGATGGAGCAACTAAGATTATCAGAAACTTGCTCGTTCCACCATCATTTGTAA
CACTCGATGGTAAAGATTTTGGTGATGTCGTAGCTTCTAAGATGGTCAATTACGGTCAAGTATGGCAAAATATGAACTTC
GCTGATGCCCAAGATGCTTACTACAATGCCGATAAGGCCAAAGAAGTCTTTGCTCAAGCTAAGAAAGAATTGGAAGCCAA
AGGTGTTCAATTCCCAATTCACTTGGATTTACCAGTTGACCAAACCTTTAAGAAGGGTGTCCAAGAGGCAAGCTCTTTCA
AACAGTCTATTGAATCTGTCCTAGGTGCAGATAATGTCGTTATCGATATTCAAATGCTGACTACAGAAGAAATGGATAGT
ATTGGTTATCTAGCAAATACGGCAGCGCAAAAAGACTATGACCTCTATAACGGTGGTTGGGGACCTGACTATCAAGATCC
ATCAACCTACCTTGATACTCTAAGTTTAACAAGTGGTGGCTCATTGCAAAATCTTGGTCTAGAACCTGGTGAAACCAATG
CCAAAGCAACAGCTGTTGGTTTGGATGTCTATACTAAGATGTTAGAAGAAGCTAATGCTGAACAAGATTTGAACAAACGT
TATGATAAGTACGCTGAAGCTCAAGCCTGGTTAGTTGACAGTTCGCTTGCTCTTCCAAACGTTTCTCAAGGTGGAACTCC
TGGATTGAGAAGAACTGTACCATTCTCTGCTGCCTTCTCTCAAGCAGGAAATAAAGGTGTTGAATCATACAAATACGTTA
AATTGCAAGATAAGGTTGTCACAACGGCTGAGTATGAAGAAGCTAGACAAAAATGGCTGAAAGAAAAAGAAGAATCTAAT
AAAAAAGCCCAAGAAGAATTAGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.599

100

0.581
  amiA3 Streptococcus thermophilus LMG 18311

56.753

100

0.574
  amiA3 Streptococcus thermophilus LMD-9

56.449

100

0.571

Multiple sequence alignment