Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NBW44_RS01075 Genome accession   NZ_OW724079
Coordinates   187922..189904 (+) Length   660 a.a.
NCBI ID   WP_250306842.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 182922..194904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS01065 - 185072..187174 (+) 2103 WP_250306841.1 ATP-dependent Clp protease ATP-binding subunit -
  NBW44_RS01070 - 187234..187716 (-) 483 WP_178895378.1 S-ribosylhomocysteine lyase -
  NBW44_RS01075 amiA 187922..189904 (+) 1983 WP_250306842.1 peptide ABC transporter substrate-binding protein Regulator
  NBW44_RS01080 pbp1a 189961..192093 (-) 2133 WP_250306843.1 penicillin-binding protein PBP1A -
  NBW44_RS01085 recU 192090..192686 (-) 597 WP_250306844.1 Holliday junction resolvase RecU -
  NBW44_RS01090 - 192754..193281 (+) 528 WP_250306845.1 SLOG family protein -
  NBW44_RS01095 gpsB 193351..193680 (+) 330 WP_312847906.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73172.76 Da        Isoelectric Point: 4.5844

>NTDB_id=1152578 NBW44_RS01075 WP_250306842.1 187922..189904(+) (amiA) [Streptococcus sp. Marseille-Q3533]
MKFSKVMALAGVTLLASGVLAACSGSGSSAKGEKTFSYVYETDPDSLNYLTTGKAAVANITSNVVDGLMENDRYGNFVPS
MAENWSVSQDGLTYTYTIRKDAKWYTSEGEEYAPVKAQDFVTGLKYAADNKSEALYLVQESIKGLDAYVKGEVKDFSEVG
IKAIDDQTVQYTLNKPESFWNSKTTMGILAPVNEEFLTSKGSDFAKATDPSSILYNGPFLLKSLVAKSSVEFEKNPNYWD
KDNVHIDKVKLSFWDGQDTGKLADTFKDGGFSMARLFPTSAGYPELEKEFKDNIVYTPQDSATFLVGTNIDRQSYKYTSK
TTDEQKTSTKKALLNKDFRQAIAFGFDRTAYASQVNGESGASKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWKDV
NLDDAQDGLYNPEKAKAEFAKAKTALQAEGVQFPIHLDMPVDQTNTTKVQRVQSLKQSLEATLGTDNVVIDIQQLQKDEV
LNVTYFAETAAGEDWDLSDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEADNEVT
DVSKRYDKYAAAQAWLTDSALIIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLELQDKPVTADEYQKAQDKW
KKEKEESNKKAQEELASHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1152578 NBW44_RS01075 WP_250306842.1 187922..189904(+) (amiA) [Streptococcus sp. Marseille-Q3533]
ATGAAATTTTCAAAAGTAATGGCCCTAGCAGGAGTGACTCTGTTAGCGTCAGGTGTTTTGGCAGCTTGTTCAGGTTCAGG
CTCTAGTGCAAAAGGTGAGAAAACTTTTTCTTACGTTTATGAAACAGATCCAGACAGCCTCAACTATCTGACAACAGGTA
AGGCTGCAGTTGCGAATATCACAAGTAATGTTGTTGACGGTTTGATGGAGAATGACCGTTACGGGAACTTCGTGCCATCT
ATGGCAGAAAACTGGTCAGTATCTCAAGATGGTTTGACTTACACTTATACAATCCGTAAAGATGCTAAGTGGTACACTTC
TGAAGGTGAAGAGTATGCACCTGTGAAAGCTCAAGACTTTGTAACAGGTCTTAAATATGCAGCTGATAATAAGTCAGAAG
CCCTTTATCTTGTTCAAGAATCCATTAAAGGTCTTGACGCTTATGTCAAAGGTGAAGTAAAAGACTTCTCAGAAGTTGGA
ATCAAGGCAATTGATGATCAAACTGTTCAATATACTTTGAATAAACCAGAAAGCTTCTGGAACTCTAAGACAACCATGGG
TATTCTAGCACCAGTCAATGAAGAATTCCTTACTTCTAAAGGAAGTGACTTTGCCAAAGCAACTGATCCAAGCAGTATTC
TTTACAACGGTCCTTTCTTGTTGAAATCATTGGTAGCTAAATCTTCAGTAGAATTTGAAAAGAATCCAAACTACTGGGAT
AAGGACAATGTTCATATTGATAAAGTAAAACTATCATTCTGGGATGGTCAAGATACAGGCAAACTTGCAGACACCTTTAA
GGATGGCGGCTTCTCAATGGCTCGTCTCTTCCCAACAAGTGCAGGATATCCTGAACTTGAAAAAGAGTTTAAGGATAACA
TCGTTTATACACCACAAGATTCTGCTACTTTCTTAGTTGGGACAAATATTGACCGTCAGTCTTACAAGTACACTTCTAAG
ACTACAGATGAGCAAAAGACATCAACTAAAAAAGCTCTCCTAAACAAAGACTTCCGTCAAGCCATCGCCTTTGGTTTTGA
TAGAACTGCTTATGCTTCTCAAGTAAATGGAGAAAGTGGAGCAAGCAAACTTCTTCGTAATTTGTTTGTACCACCAACAT
TTGTTCAAGCTGATGGTAAAAACTTTGGTGAATTAGTTAAAGAAAAATTGGTAACCTATGGTGATGAGTGGAAAGATGTC
AATCTAGATGACGCTCAAGATGGTCTTTACAATCCTGAAAAAGCGAAAGCAGAATTTGCAAAGGCTAAGACAGCTCTTCA
AGCAGAAGGTGTTCAATTCCCAATCCACTTGGATATGCCAGTCGACCAGACTAATACTACTAAAGTTCAACGTGTTCAAT
CATTGAAACAATCGCTTGAAGCAACATTAGGAACTGACAATGTTGTTATTGACATTCAACAACTTCAAAAAGATGAAGTT
CTTAATGTTACCTACTTTGCTGAAACAGCTGCTGGAGAAGATTGGGATCTCTCAGATAACGTTGGATGGTCTCCAGACTA
CATTGACCCATCTACTTACCTTGATATCATCAAACCGTCTGTAGGTGAAAATACTAAGACTTATCTAGGATTTGATTCTG
GTACAAACAACGCCGCTGCCAAACAAGTTGGTTTGGAAGATTACGAAAAGATGGTTGTTGAAGCTGACAATGAAGTCACA
GATGTTTCAAAACGTTATGATAAATATGCCGCTGCCCAAGCTTGGTTGACAGATAGCGCTTTGATTATTCCAACAACTTC
TCAAACTGGACGTCCAATGTTGTCTAAGATGGTGCCATTCACCCTTCCATTTGCATACTCAGGTAACAAGGGTATGAGTG
AAGCCCTCTTGTACAAGTACCTTGAACTTCAAGATAAACCAGTAACTGCTGATGAATATCAAAAAGCTCAAGATAAATGG
AAGAAAGAAAAAGAAGAATCTAATAAAAAAGCGCAAGAAGAACTTGCAAGCCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.212

100

0.603
  amiA3 Streptococcus thermophilus LMD-9

59.909

100

0.6
  amiA3 Streptococcus thermophilus LMG 18311

59.455

100

0.595

Multiple sequence alignment