Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   NBW44_RS00485 Genome accession   NZ_OW724079
Coordinates   77690..78697 (+) Length   335 a.a.
NCBI ID   WP_142558440.1    Uniprot ID   -
Organism   Streptococcus sp. Marseille-Q3533     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 72690..83697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBW44_RS00460 folP 73480..74424 (+) 945 WP_250306758.1 dihydropteroate synthase -
  NBW44_RS00465 - 74426..75724 (+) 1299 WP_250306759.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NBW44_RS00470 folE 75728..76282 (+) 555 WP_045614600.1 GTP cyclohydrolase I FolE -
  NBW44_RS00475 folK 76320..77132 (+) 813 WP_250306760.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NBW44_RS00480 - 77176..77493 (-) 318 WP_075566264.1 DUF960 domain-containing protein -
  NBW44_RS00485 ccpA 77690..78697 (+) 1008 WP_142558440.1 catabolite control protein A Regulator
  NBW44_RS00490 - 78739..79701 (-) 963 WP_250306761.1 asparaginase -
  NBW44_RS00495 - 79768..81159 (+) 1392 WP_250306762.1 Cof-type HAD-IIB family hydrolase -
  NBW44_RS00500 - 81193..81645 (-) 453 WP_142558434.1 universal stress protein -
  NBW44_RS00505 - 81791..82630 (+) 840 WP_250306763.1 metallophosphoesterase family protein -
  NBW44_RS00510 - 82690..83127 (+) 438 WP_250306764.1 Rrf2 family transcriptional regulator -

Sequence


Protein


Download         Length: 335 a.a.        Molecular weight: 37182.32 Da        Isoelectric Point: 6.0812

>NTDB_id=1152575 NBW44_RS00485 WP_142558440.1 77690..78697(+) (ccpA) [Streptococcus sp. Marseille-Q3533]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIERLDYRPNAVARGLASKKTTTVGVVIPDITNTFFA
TLAKGIDDIAEMYKYNIVLANSDEDDEKEVSVVNTLFSKQVDGVIFMGYHLTEKIRSEFSRSRTPVVLAGTVDVEHQLPS
VNIDYKTATADAVRHLLKRNKKIAFISGPLVDDINGKVRLVGYKDALKEAGINYSEGLVFESKYRYDDGYALAERLISSK
ATAAIVTGDELAAGVLNGLADQGISVPEEFEIITSDDSQIARYTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLQHGLTERRSTRKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1152575 NBW44_RS00485 WP_142558440.1 77690..78697(+) (ccpA) [Streptococcus sp. Marseille-Q3533]
ATGAACACAGATGATACAGTAACAATTTATGACGTTGCCCGTGAAGCAGGAGTTTCGATGGCGACAGTTAGTCGTGTTGT
TAACGGAAATAAAAATGTTAAAGAAAACACTCGAAAGAAAGTCTTAGAGGTTATTGAACGTCTAGATTATCGTCCTAATG
CAGTAGCTCGTGGCTTAGCAAGTAAGAAGACAACAACGGTTGGAGTTGTCATTCCAGATATTACAAATACATTTTTTGCG
ACTCTAGCAAAAGGAATTGATGATATTGCCGAAATGTATAAATACAATATTGTCCTTGCTAATAGTGATGAAGATGATGA
AAAAGAAGTATCGGTGGTTAATACCCTCTTCTCAAAACAGGTTGATGGTGTCATCTTTATGGGCTATCACTTAACAGAAA
AAATCCGTTCAGAATTCTCACGTTCACGAACGCCTGTAGTTTTGGCAGGAACTGTGGATGTAGAGCATCAACTTCCGAGC
GTTAATATTGATTATAAGACTGCTACTGCAGATGCTGTTCGTCATTTGTTGAAGCGCAACAAAAAAATTGCCTTTATCAG
TGGTCCATTAGTAGACGATATTAATGGGAAAGTGCGCTTGGTTGGATATAAGGATGCATTGAAAGAAGCGGGTATCAACT
ATAGTGAAGGTCTTGTCTTTGAGTCAAAATACCGCTATGATGATGGTTATGCTCTAGCAGAACGTTTGATTTCTTCAAAA
GCAACAGCAGCTATTGTTACAGGTGATGAATTGGCTGCAGGAGTCTTGAATGGATTGGCCGACCAAGGAATTTCTGTGCC
AGAAGAATTTGAAATTATCACCAGTGATGATTCACAAATCGCACGCTATACAAGACCAAATCTAACGACTATTGCTCAAC
CTTTGTATGATTTAGGTGCAATCAGTATGCGTATGTTGACTAAGATTATGCACAAAGAAGAGTTGGAAGAAAGAGAAGTA
CTACTTCAACATGGCTTAACAGAGCGTCGATCAACTCGTAAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

88.955

100

0.89

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.425

99.701

0.872

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.308

98.806

0.576


Multiple sequence alignment