Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | F544_RS10100 | Genome accession | NZ_CP006956 |
| Coordinates | 2187907..2188245 (-) | Length | 112 a.a. |
| NCBI ID | WP_025289901.1 | Uniprot ID | W0R851 |
| Organism | Bibersteinia trehalosi USDA-ARS-USMARC-190 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2182907..2193245
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F544_RS10065 (F544_20390) | nlpD | 2182920..2184128 (+) | 1209 | WP_025289896.1 | murein hydrolase activator NlpD | - |
| F544_RS10070 (F544_20400) | - | 2184139..2184510 (+) | 372 | WP_025289897.1 | hypothetical protein | - |
| F544_RS10075 (F544_20410) | - | 2184563..2185126 (+) | 564 | WP_025289898.1 | DNA-3-methyladenine glycosylase I | - |
| F544_RS10080 (F544_20420) | - | 2185123..2185842 (+) | 720 | WP_025289899.1 | 4'-phosphopantetheinyl transferase family protein | - |
| F544_RS10085 (F544_20430) | psiE | 2185846..2186256 (+) | 411 | WP_015433468.1 | phosphate-starvation-inducible protein PsiE | - |
| F544_RS10090 (F544_20440) | nudF | 2186271..2186882 (+) | 612 | WP_015433469.1 | ADP-ribose diphosphatase | - |
| F544_RS10095 (F544_20450) | asd | 2186953..2187843 (-) | 891 | WP_025289900.1 | archaetidylserine decarboxylase | - |
| F544_RS10100 (F544_20460) | comEA/comE1 | 2187907..2188245 (-) | 339 | WP_025289901.1 | ComEA family DNA-binding protein | Machinery gene |
| F544_RS10105 (F544_20470) | - | 2188504..2189868 (+) | 1365 | WP_025289902.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| F544_RS10110 (F544_20480) | - | 2189924..2190325 (+) | 402 | WP_025289903.1 | MliC family protein | - |
| F544_RS10115 (F544_20490) | waaF | 2190336..2191373 (+) | 1038 | WP_025289904.1 | lipopolysaccharide heptosyltransferase II | - |
| F544_RS10120 (F544_20500) | hemB | 2191383..2192408 (+) | 1026 | WP_015433475.1 | porphobilinogen synthase | - |
| F544_RS10125 (F544_20510) | - | 2192418..2192915 (+) | 498 | WP_015433476.1 | YbhB/YbcL family Raf kinase inhibitor-like protein | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 12123.90 Da Isoelectric Point: 6.9794
>NTDB_id=115257 F544_RS10100 WP_025289901.1 2187907..2188245(-) (comEA/comE1) [Bibersteinia trehalosi USDA-ARS-USMARC-190]
MKKYLRIALSSLVAFCTLSALAQTQGEATHTEPVAIEQVAQAQVQNVNLVNLNTATAAEIQDKLVGIGAKKAQAIVEYRE
KNGNFISLEQLTEVSGIGKATLDKNRDRLVLE
MKKYLRIALSSLVAFCTLSALAQTQGEATHTEPVAIEQVAQAQVQNVNLVNLNTATAAEIQDKLVGIGAKKAQAIVEYRE
KNGNFISLEQLTEVSGIGKATLDKNRDRLVLE
Nucleotide
Download Length: 339 bp
>NTDB_id=115257 F544_RS10100 WP_025289901.1 2187907..2188245(-) (comEA/comE1) [Bibersteinia trehalosi USDA-ARS-USMARC-190]
ATGAAAAAATATCTGCGTATTGCGCTTTCTTCCCTTGTGGCATTTTGTACGCTATCTGCTTTAGCACAAACGCAAGGTGA
AGCAACACATACTGAACCGGTTGCTATTGAGCAAGTTGCGCAGGCTCAGGTACAGAATGTCAATTTAGTTAATCTGAATA
CAGCAACGGCGGCTGAAATTCAAGATAAATTAGTTGGTATTGGTGCGAAAAAAGCGCAAGCGATAGTAGAATATCGCGAG
AAAAATGGTAATTTTATTAGCCTTGAACAGCTCACGGAAGTTTCTGGTATTGGTAAAGCAACACTAGATAAGAACCGCGA
TCGCCTTGTATTAGAGTAA
ATGAAAAAATATCTGCGTATTGCGCTTTCTTCCCTTGTGGCATTTTGTACGCTATCTGCTTTAGCACAAACGCAAGGTGA
AGCAACACATACTGAACCGGTTGCTATTGAGCAAGTTGCGCAGGCTCAGGTACAGAATGTCAATTTAGTTAATCTGAATA
CAGCAACGGCGGCTGAAATTCAAGATAAATTAGTTGGTATTGGTGCGAAAAAAGCGCAAGCGATAGTAGAATATCGCGAG
AAAAATGGTAATTTTATTAGCCTTGAACAGCTCACGGAAGTTTCTGGTATTGGTAAAGCAACACTAGATAAGAACCGCGA
TCGCCTTGTATTAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
61.062 |
100 |
0.616 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
66.216 |
66.071 |
0.437 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
45 |
89.286 |
0.402 |