Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   OC536_RS05460 Genome accession   NZ_OW443150
Coordinates   1165160..1167328 (+) Length   722 a.a.
NCBI ID   WP_172779501.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1160160..1172328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC536_RS05435 (CNRVC190247_01095) - 1160548..1161123 (-) 576 WP_000999601.1 PilZ domain-containing protein -
  OC536_RS05440 (CNRVC190247_01096) lolC 1161299..1162507 (+) 1209 WP_032476337.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  OC536_RS05445 (CNRVC190247_01097) lolD 1162500..1163186 (+) 687 WP_032476336.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OC536_RS05450 (CNRVC190247_01098) lolE 1163187..1164431 (+) 1245 WP_000493013.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  OC536_RS05455 (CNRVC190247_01099) - 1164546..1165076 (-) 531 WP_001881633.1 DUF2062 domain-containing protein -
  OC536_RS05460 (CNRVC190247_01100) comEC 1165160..1167328 (+) 2169 WP_172779501.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OC536_RS05465 (CNRVC190247_01101) msbA 1167359..1169107 (+) 1749 WP_000052155.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  OC536_RS05470 (CNRVC190247_01102) lpxK 1169110..1170117 (+) 1008 WP_032476388.1 tetraacyldisaccharide 4'-kinase -
  OC536_RS05475 (CNRVC190247_01103) - 1170098..1170277 (+) 180 WP_000350068.1 Trm112 family protein -
  OC536_RS05480 (CNRVC190247_01104) kdsB 1170277..1171050 (+) 774 WP_032476335.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 81548.26 Da        Isoelectric Point: 7.9738

>NTDB_id=1152343 OC536_RS05460 WP_172779501.1 1165160..1167328(+) (comEC) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
MPSWGWAWLCLIVMVLLGYHRVGRQFLGFVAAILTIVLQGNLIRDQSNVLYQAGPDIIIKGRVDSFFTQTRYAYEGFVLI
HEVNGQTLNKMTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYMAQSVVARAVVKPDTAYQIVQESGIR
SSLFFELEQLTHTSSYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAISGLHIGIAFSVGYFLGLGMMRLHAQLLWSP
FVCGALLAVLYAWLAGFTLPTQRALIMCLLNVALLMLAFPLSALKRILLTLVAVLLWSPFASLSNSFWMSFLAVAIVLYQ
LASQSQRQVWWKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWPSMAAAYWPWV
DWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMNLKACSLLLGMIGLWWWFPSLTPLWRMDVLDVGHGLAI
VIEQDERAIVYDTGSSWPGGSYVQSVIEPILQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPNWIRASQLGTEFMPCI
RGESWQWQSLHFTVLWPPQAVSRAYNQHSCVIRMTDTQSKHSVLLSGDVTAMGEWLLARDGAQLQSEVMIVPHHGSKTSS
TAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQISLFFYPDQLDWFTQRSLGWQPWYRQMLRKG
VE

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=1152343 OC536_RS05460 WP_172779501.1 1165160..1167328(+) (comEC) [Vibrio cholerae strain CNRVC190247 isolate YE-NCPHL-18035-PI]
ATGCCGAGTTGGGGTTGGGCTTGGTTATGCCTTATTGTTATGGTTTTGCTCGGTTATCACCGAGTTGGCCGTCAATTCCT
TGGCTTCGTGGCTGCCATACTAACCATTGTGCTACAGGGCAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAG
GGCCGGATATTATCATAAAAGGCCGTGTTGACAGCTTTTTTACGCAAACTCGTTACGCTTATGAGGGTTTTGTCCTCATT
CATGAAGTGAATGGACAAACCTTAAACAAAATGACTCGCCCTCGCATACGTTTAAGTGCCCCTTTACTGTTACAACCCAA
TGACCGCGTCGAATTTTCGGTAACTCTCAAGCCGATAGTGGGTCGACTCAACCAAACCGGCTTTGATTTAGAAGCGCATT
ACATGGCGCAATCTGTCGTCGCACGAGCGGTCGTAAAACCTGACACTGCTTATCAAATTGTGCAAGAGAGTGGCATAAGG
TCAAGTTTGTTTTTTGAGCTAGAGCAATTAACGCATACCAGCTCATACCAAGGATTGATCTTAGCCCTGACGTTTGGCGA
GCGAAAAGGTATTGATGAGCAAGAGTGGCAAGCCTTACGCAATAGTGGCTTAATTCATTTAGTGGCGATTTCGGGGCTGC
ACATTGGTATCGCTTTTAGCGTGGGGTATTTTCTCGGGCTCGGCATGATGCGTCTTCATGCTCAGTTATTGTGGTCCCCT
TTTGTGTGTGGGGCTTTACTGGCGGTGCTCTATGCTTGGCTGGCCGGATTTACGTTGCCTACTCAGCGTGCATTGATTAT
GTGCTTACTCAATGTGGCGTTGCTCATGTTGGCTTTTCCTCTTTCCGCGCTCAAGCGGATTCTACTCACCTTAGTCGCGG
TCTTGCTTTGGTCGCCATTCGCCTCACTTTCAAACAGTTTCTGGATGTCGTTTTTGGCGGTTGCGATTGTTCTCTACCAA
TTAGCCAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCTCTGCTTTGGGCGCAGGTGTTCCTCGTCTGTTTAATGGCGCC
GGTCACGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGCAGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGG
TGATTGTCCCAGCTTTGTTTTTGGGTCTATTACTCATGGTGGTATGGCCTAGTATGGCCGCCGCTTACTGGCCTTGGGTG
GATTGGACGTTTTTACCGCTCGATTGGGCTTTGCAGTTTGCCGATGTAGGCTGGTGGGTGGTCCCCAGCAAAGTACAAGG
TGTGGTCGCAGCGAGTGTGGCCATCCTCTTACTTTATCGATTTATGAACTTAAAAGCCTGCAGCTTATTATTGGGTATGA
TTGGCTTATGGTGGTGGTTTCCCTCTCTCACTCCACTTTGGCGAATGGATGTGCTGGATGTTGGACATGGCTTGGCGATT
GTGATTGAGCAAGATGAGCGAGCAATTGTCTACGATACAGGCAGCAGTTGGCCGGGAGGCAGCTATGTGCAAAGCGTGAT
TGAGCCTATTCTCCAACAGCGAGGGCTACGCCAAGTCGATGGAGTGATTTTAAGTCATCTTGATAATGATCATGCGGGTG
ATTGGCAAGGTTTAGCTGAGCGCTGGCAACCTAATTGGATTCGTGCCAGCCAACTCGGGACAGAGTTTATGCCTTGTATC
CGTGGTGAAAGCTGGCAGTGGCAATCTCTCCATTTTACGGTGTTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCA
GCATTCGTGTGTGATTCGTATGACCGATACTCAGTCTAAGCATTCTGTACTGCTCTCCGGGGATGTCACAGCCATGGGGG
AGTGGCTGCTTGCTCGCGACGGAGCGCAACTGCAAAGTGAGGTGATGATCGTGCCGCATCACGGCAGTAAAACGTCGTCC
ACCGCAGAGTTTATTGCCCAAGTGAATCCCAAACTTGCGATTGCTTCTGTGGCGAAAGATAACCGCTGGAATTTGCCTAA
TCCGCAAGTCGTGGCACGTTATCAAGCTCAGCAAGTTGAGTGGCTAGATACTGGACACGCTGGGCAAATTAGCCTCTTTT
TCTATCCAGATCAGCTGGATTGGTTTACCCAGCGTAGCCTTGGCTGGCAGCCTTGGTATAGGCAGATGCTGCGTAAAGGA
GTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(7-148)

Metallo-beta-lactamase superfamily (Lactamase_B)

(474-654)

Competence protein (Competence)

(183-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

98.892

100

0.989
  comEC Vibrio parahaemolyticus RIMD 2210633

41.257

100

0.418
  comEC Vibrio campbellii strain DS40M4

41.265

100

0.416

Multiple sequence alignment