Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | F543_RS01245 | Genome accession | NZ_CP006955 |
| Coordinates | 248278..248616 (+) | Length | 112 a.a. |
| NCBI ID | WP_015433471.1 | Uniprot ID | A0A179CX46 |
| Organism | Bibersteinia trehalosi USDA-ARS-USMARC-189 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 243278..253616
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F543_RS01220 (F543_2550) | - | 243593..244090 (-) | 498 | WP_015433476.1 | YbhB/YbcL family Raf kinase inhibitor-like protein | - |
| F543_RS01225 (F543_2560) | hemB | 244100..245125 (-) | 1026 | WP_015433475.1 | porphobilinogen synthase | - |
| F543_RS01230 (F543_2570) | waaF | 245135..246172 (-) | 1038 | WP_015433474.1 | lipopolysaccharide heptosyltransferase II | - |
| F543_RS01235 (F543_2580) | - | 246183..246584 (-) | 402 | WP_015433473.1 | MliC family protein | - |
| F543_RS01240 (F543_2590) | - | 246640..248019 (-) | 1380 | WP_015433472.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| F543_RS01245 (F543_2600) | comEA/comE1 | 248278..248616 (+) | 339 | WP_015433471.1 | ComEA family DNA-binding protein | Machinery gene |
| F543_RS01250 (F543_2610) | asd | 248680..249570 (+) | 891 | WP_015433470.1 | archaetidylserine decarboxylase | - |
| F543_RS01255 (F543_2620) | nudF | 249641..250252 (-) | 612 | WP_015433469.1 | ADP-ribose diphosphatase | - |
| F543_RS01260 (F543_2630) | psiE | 250267..250677 (-) | 411 | WP_015433468.1 | phosphate-starvation-inducible protein PsiE | - |
| F543_RS01265 (F543_2640) | - | 250681..251400 (-) | 720 | WP_015433467.1 | 4'-phosphopantetheinyl transferase family protein | - |
| F543_RS01270 (F543_2650) | - | 251397..251960 (-) | 564 | WP_015433466.1 | DNA-3-methyladenine glycosylase I | - |
| F543_RS01275 (F543_2660) | - | 252013..252384 (-) | 372 | WP_015433465.1 | hypothetical protein | - |
| F543_RS01280 (F543_2670) | nlpD | 252395..253609 (-) | 1215 | WP_015433464.1 | murein hydrolase activator NlpD | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 12223.04 Da Isoelectric Point: 8.0035
>NTDB_id=115213 F543_RS01245 WP_015433471.1 248278..248616(+) (comEA/comE1) [Bibersteinia trehalosi USDA-ARS-USMARC-189]
MKKYLRIALSSLVAFCTLSALAQTQREATHTEPVAIEQVAQAQVQNVNLVNLNTATAAEIQDKLVGIGAKKAQAIVEYRE
KNGNFISLEQLTEVSGIGKATLDKNRDRLVLE
MKKYLRIALSSLVAFCTLSALAQTQREATHTEPVAIEQVAQAQVQNVNLVNLNTATAAEIQDKLVGIGAKKAQAIVEYRE
KNGNFISLEQLTEVSGIGKATLDKNRDRLVLE
Nucleotide
Download Length: 339 bp
>NTDB_id=115213 F543_RS01245 WP_015433471.1 248278..248616(+) (comEA/comE1) [Bibersteinia trehalosi USDA-ARS-USMARC-189]
ATGAAAAAATATCTGCGTATTGCGCTTTCTTCCCTTGTGGCATTTTGTACGCTATCTGCTTTAGCACAAACGCAACGTGA
AGCAACACATACTGAACCGGTTGCTATTGAGCAAGTTGCGCAGGCTCAGGTACAGAATGTCAATTTAGTTAATCTGAATA
CAGCAACGGCGGCTGAAATTCAAGATAAATTAGTCGGTATTGGTGCGAAAAAAGCGCAAGCGATAGTAGAATATCGCGAG
AAAAATGGCAATTTTATTAGCCTTGAACAGCTCACGGAAGTTTCTGGTATTGGTAAAGCAACACTAGATAAGAACCGCGA
TCGCCTTGTATTAGAGTAA
ATGAAAAAATATCTGCGTATTGCGCTTTCTTCCCTTGTGGCATTTTGTACGCTATCTGCTTTAGCACAAACGCAACGTGA
AGCAACACATACTGAACCGGTTGCTATTGAGCAAGTTGCGCAGGCTCAGGTACAGAATGTCAATTTAGTTAATCTGAATA
CAGCAACGGCGGCTGAAATTCAAGATAAATTAGTCGGTATTGGTGCGAAAAAAGCGCAAGCGATAGTAGAATATCGCGAG
AAAAATGGCAATTTTATTAGCCTTGAACAGCTCACGGAAGTTTCTGGTATTGGTAAAGCAACACTAGATAAGAACCGCGA
TCGCCTTGTATTAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
62.281 |
100 |
0.634 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.122 |
87.5 |
0.491 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
45 |
89.286 |
0.402 |