Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | F542_RS00935 | Genome accession | NZ_CP006954 |
| Coordinates | 203423..203761 (+) | Length | 112 a.a. |
| NCBI ID | WP_015433471.1 | Uniprot ID | A0A179CX46 |
| Organism | Bibersteinia trehalosi USDA-ARS-USMARC-188 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 198423..208761
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F542_RS00910 (F542_1880) | - | 198738..199235 (-) | 498 | WP_015433476.1 | YbhB/YbcL family Raf kinase inhibitor-like protein | - |
| F542_RS00915 (F542_1890) | hemB | 199245..200270 (-) | 1026 | WP_015433475.1 | porphobilinogen synthase | - |
| F542_RS00920 (F542_1900) | waaF | 200280..201317 (-) | 1038 | WP_015433474.1 | lipopolysaccharide heptosyltransferase II | - |
| F542_RS00925 (F542_1910) | - | 201328..201729 (-) | 402 | WP_015433473.1 | MliC family protein | - |
| F542_RS00930 (F542_1920) | - | 201785..203164 (-) | 1380 | WP_015433472.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| F542_RS00935 (F542_1930) | comEA/comE1 | 203423..203761 (+) | 339 | WP_015433471.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| F542_RS00940 (F542_1940) | asd | 203825..204715 (+) | 891 | WP_015433470.1 | archaetidylserine decarboxylase | - |
| F542_RS00945 (F542_1950) | nudF | 204786..205397 (-) | 612 | WP_015433469.1 | ADP-ribose diphosphatase | - |
| F542_RS00950 (F542_1960) | psiE | 205412..205822 (-) | 411 | WP_015433468.1 | phosphate-starvation-inducible protein PsiE | - |
| F542_RS00955 (F542_1970) | - | 205826..206545 (-) | 720 | WP_015433467.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| F542_RS00960 (F542_1980) | - | 206542..207105 (-) | 564 | WP_015433466.1 | DNA-3-methyladenine glycosylase I | - |
| F542_RS00965 (F542_1990) | - | 207158..207529 (-) | 372 | WP_015433465.1 | hypothetical protein | - |
| F542_RS00970 (F542_2000) | nlpD | 207540..208754 (-) | 1215 | WP_015433464.1 | murein hydrolase activator NlpD | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 12223.04 Da Isoelectric Point: 8.0035
>NTDB_id=115188 F542_RS00935 WP_015433471.1 203423..203761(+) (comEA/comE1) [Bibersteinia trehalosi USDA-ARS-USMARC-188]
MKKYLRIALSSLVAFCTLSALAQTQREATHTEPVAIEQVAQAQVQNVNLVNLNTATAAEIQDKLVGIGAKKAQAIVEYRE
KNGNFISLEQLTEVSGIGKATLDKNRDRLVLE
MKKYLRIALSSLVAFCTLSALAQTQREATHTEPVAIEQVAQAQVQNVNLVNLNTATAAEIQDKLVGIGAKKAQAIVEYRE
KNGNFISLEQLTEVSGIGKATLDKNRDRLVLE
Nucleotide
Download Length: 339 bp
>NTDB_id=115188 F542_RS00935 WP_015433471.1 203423..203761(+) (comEA/comE1) [Bibersteinia trehalosi USDA-ARS-USMARC-188]
ATGAAAAAATATCTGCGTATTGCGCTTTCTTCCCTTGTGGCATTTTGTACGCTATCTGCTTTAGCACAAACGCAACGTGA
AGCAACACATACTGAACCGGTTGCTATTGAGCAAGTTGCGCAGGCTCAGGTACAGAATGTCAATTTAGTTAATCTGAATA
CAGCAACGGCGGCTGAAATTCAAGATAAATTAGTCGGTATTGGTGCGAAAAAAGCGCAAGCGATAGTAGAATATCGCGAG
AAAAATGGCAATTTTATTAGCCTTGAACAGCTCACGGAAGTTTCTGGTATTGGTAAAGCAACACTAGATAAGAACCGCGA
TCGCCTTGTATTAGAGTAA
ATGAAAAAATATCTGCGTATTGCGCTTTCTTCCCTTGTGGCATTTTGTACGCTATCTGCTTTAGCACAAACGCAACGTGA
AGCAACACATACTGAACCGGTTGCTATTGAGCAAGTTGCGCAGGCTCAGGTACAGAATGTCAATTTAGTTAATCTGAATA
CAGCAACGGCGGCTGAAATTCAAGATAAATTAGTCGGTATTGGTGCGAAAAAAGCGCAAGCGATAGTAGAATATCGCGAG
AAAAATGGCAATTTTATTAGCCTTGAACAGCTCACGGAAGTTTCTGGTATTGGTAAAGCAACACTAGATAAGAACCGCGA
TCGCCTTGTATTAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
62.281 |
100 |
0.634 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.122 |
87.5 |
0.491 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
45 |
89.286 |
0.402 |