Detailed information NTG1151846

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L1X57_RS14465
• Genome accession: NZ_OV350343
• Coordinates: 3239078..3239923 (-)
• Length: 281 a.a.
• NCBI ID: WP_009724768.1
• Uniprot ID: A0AA35GZZ8
• Organism: Halomonas sp. TD01 strain Halomonas Bluephagenesis
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3234078..3244923

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1X57_RS14435 (HPTD01_2976)	-	3235131..3235505 (+)	375	WP_009724762.1	histone-like nucleoid-structuring protein, MvaT/MvaU family	-
L1X57_RS14440 (HPTD01_2977)	-	3235583..3236416 (-)	834	WP_009724763.1	helix-turn-helix transcriptional regulator	-
L1X57_RS14445 (HPTD01_2979)	-	3236789..3237133 (+)	345	WP_009724764.1	hypothetical protein	-
L1X57_RS14450 (HPTD01_2980)	-	3237165..3238037 (-)	873	WP_009724765.1	hypothetical protein	-
L1X57_RS14455 (HPTD01_2981)	yacG	3238145..3238378 (-)	234	WP_009724766.1	DNA gyrase inhibitor YacG	-
L1X57_RS14460 (HPTD01_2982)	coaE	3238441..3239037 (-)	597	WP_009724767.1	dephospho-CoA kinase	-
L1X57_RS14465 (HPTD01_2983)	pilD	3239078..3239923 (-)	846	WP_009724768.1	A24 family peptidase	Machinery gene
L1X57_RS14470 (HPTD01_2984)	-	3239985..3241214 (-)	1230	WP_009724769.1	type II secretion system F family protein	-
L1X57_RS14475 (HPTD01_2985)	pilB	3241223..3242977 (-)	1755	WP_234667767.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L1X57_RS18860 (HPTD01_2987)	-	3243214..3243654 (+)	441	WP_009724771.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
L1X57_RS18865 (HPTD01_2988)	-	3243737..3244129 (+)	393	WP_009724772.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
L1X57_RS14490 (HPTD01_2989)	-	3244222..3244677 (+)	456	WP_009724773.1	anti-virulence regulator CigR family protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 30647.91 Da
• Isoelectric Point: 8.5757

>NTDB_id=1151846 L1X57_RS14465 WP_009724768.1 3239078..3239923(-) (pilD) [Halomonas sp. TD01 strain Halomonas Bluephagenesis]
MGLPPSFYLFFALLIGLCFGSFLNVVITRLPVILMRSWRNEARASLELAEEASPRFNLATPKSMCPRCEQPIAWHDNLPL
VGWLKRRGKCAHCNTPISVQYPLVELVGGLLAVAIVALHGATLSAVFIYGACLTLLALAVIDFRTYLLPDILTLPLLWVG
LAYQLLFQPLLLPSAVIGAMAGYLVLWSFYWVFKLITGKEGMGFGDFKLLAALGAWVGWSMLPLLLILSAGIGAIVGLTA
QALSPRLRGQPLPFGPFLALAGWICLLVGNELMALYTSLLY

Nucleotide

• Length: 846 bp

>NTDB_id=1151846 L1X57_RS14465 WP_009724768.1 3239078..3239923(-) (pilD) [Halomonas sp. TD01 strain Halomonas Bluephagenesis]
ATGGGTTTACCGCCAAGCTTTTACCTTTTTTTTGCTTTACTGATCGGCCTCTGTTTCGGCAGTTTTCTTAATGTTGTCAT
CACCCGTTTACCCGTTATATTGATGCGCAGCTGGCGCAATGAAGCACGCGCCTCTCTTGAACTCGCCGAAGAGGCATCTC
CCCGCTTTAACCTTGCTACCCCAAAGTCAATGTGCCCACGTTGCGAACAGCCGATTGCCTGGCACGACAACCTTCCCTTA
GTAGGCTGGCTAAAAAGAAGGGGCAAATGCGCTCATTGCAATACGCCTATCAGCGTCCAGTATCCACTCGTTGAGCTAGT
GGGCGGACTGCTTGCCGTGGCCATTGTGGCCTTGCATGGCGCGACGCTAAGCGCCGTGTTTATCTATGGCGCTTGTTTAA
CGCTGCTTGCCTTAGCTGTCATCGATTTTCGCACCTATTTACTGCCTGATATTTTAACCCTTCCGCTACTTTGGGTTGGC
TTAGCCTATCAATTGCTCTTTCAGCCTTTGTTGCTACCTAGCGCTGTCATCGGCGCGATGGCAGGCTATCTTGTGCTGTG
GAGCTTTTACTGGGTATTTAAGCTAATAACAGGCAAAGAAGGCATGGGGTTCGGGGATTTCAAATTACTCGCGGCGCTTG
GCGCTTGGGTAGGGTGGAGCATGTTACCGCTGCTGCTTATTTTATCTGCTGGCATTGGCGCGATAGTAGGATTAACCGCT
CAAGCTCTATCTCCTCGGCTGCGTGGCCAACCTCTCCCCTTTGGCCCCTTTCTTGCGTTAGCGGGTTGGATTTGCTTACT
TGTAGGCAACGAGTTAATGGCACTCTATACGTCGTTGCTTTATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (132-238)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.545	97.865	0.495
pilD	Vibrio campbellii strain DS40M4	46.071	99.644	0.459
pilD	Acinetobacter baumannii D1279779	46.038	94.306	0.434
pilD	Acinetobacter nosocomialis M2	46.038	94.306	0.434
pilD	Neisseria gonorrhoeae MS11	44.444	96.085	0.427