Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   LQ983_RS07155 Genome accession   NZ_OV100759
Coordinates   1492138..1492689 (+) Length   183 a.a.
NCBI ID   WP_230622174.1    Uniprot ID   -
Organism   Aggregatibacter sp. Marseille-P9115     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1487138..1497689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ983_RS07145 - 1490214..1490732 (+) 519 WP_230622173.1 SprT family zinc-dependent metalloprotease -
  LQ983_RS07150 - 1490959..1492113 (+) 1155 WP_006719285.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  LQ983_RS07155 pilF/pilF2 1492138..1492689 (+) 552 WP_230622174.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  LQ983_RS07160 - 1492905..1493933 (+) 1029 WP_230622175.1 RodZ family helix-turn-helix domain-containing protein -
  LQ983_RS07165 ispG 1493944..1495047 (+) 1104 WP_230622176.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  LQ983_RS07170 hisS 1495073..1496350 (+) 1278 WP_230622177.1 histidine--tRNA ligase -
  LQ983_RS07175 - 1496360..1496974 (+) 615 WP_230622178.1 YfgM family protein -
  LQ983_RS07180 - 1497031..1497483 (+) 453 WP_230622179.1 isoprenylcysteine carboxylmethyltransferase family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20995.99 Da        Isoelectric Point: 8.5822

>NTDB_id=1151824 LQ983_RS07155 WP_230622174.1 1492138..1492689(+) (pilF/pilF2) [Aggregatibacter sp. Marseille-P9115]
MVHFPFFTRIMPFIFPFLFSACVSQQVSSDFDKQQAAKARVELALGYLQQGDHNQAKANLDRAISYAPDYYLVHAARAYF
YQQQGDVIQAEQAYLTAIKLDKKQGDVFNNFGTFLCLQGKYSAAYEQFHKALKAPNYYRQTDTYENLALCALSAKDLTVY
QENLLILEKMESERAKKLALRAK

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1151824 LQ983_RS07155 WP_230622174.1 1492138..1492689(+) (pilF/pilF2) [Aggregatibacter sp. Marseille-P9115]
ATGGTTCATTTCCCATTCTTTACTCGAATTATGCCGTTTATTTTCCCCTTTCTTTTTTCTGCTTGTGTTTCCCAACAAGT
TTCATCTGATTTTGATAAACAACAAGCAGCAAAAGCCCGTGTTGAATTGGCATTAGGCTATTTGCAGCAAGGGGATCACA
ACCAAGCGAAGGCAAATTTAGACAGGGCGATTTCTTATGCGCCAGATTATTATTTAGTGCATGCGGCGCGCGCTTATTTT
TATCAGCAACAGGGCGATGTGATTCAGGCAGAACAAGCCTATTTGACTGCGATTAAGTTAGATAAAAAACAAGGTGATGT
TTTCAACAATTTCGGTACCTTTCTTTGTTTGCAAGGTAAATATTCTGCCGCCTATGAGCAATTCCATAAAGCATTAAAGG
CGCCTAATTATTATCGGCAGACTGATACTTACGAAAATCTTGCACTCTGTGCTTTGTCAGCAAAGGATTTAACGGTTTAT
CAGGAAAATCTGTTAATACTTGAAAAAATGGAATCGGAGCGGGCAAAGAAATTAGCGTTACGCGCTAAATAG

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(75-103)

Tetratricopeptide repeat (TPR_8)

(38-69)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

53.846

92.35

0.497
  pilF Glaesserella parasuis strain SC1401

42.473

100

0.432

Multiple sequence alignment