Detailed information NTG1151575

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MKZ32_RS01235
• Genome accession: NZ_OU912926
• Coordinates: 271893..272765 (-)
• Length: 290 a.a.
• NCBI ID: WP_239795600.1
• Uniprot ID: -
• Organism: Candidatus Nitrotoga arctica strain 6680 isolate 6680
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 266893..277765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKZ32_RS01200 (NTG6680_0244)	-	267000..267773 (+)	774	WP_239795595.1	elongation factor-1 alpha	-
MKZ32_RS01205 (NTG6680_0245)	-	267876..268181 (+)	306	WP_239795596.1	hypothetical protein	-
MKZ32_RS01210 (NTG6680_0246)	-	268443..269141 (+)	699	WP_239795597.1	SDR family oxidoreductase	-
MKZ32_RS01215 (NTG6680_0247)	-	269157..270170 (+)	1014	WP_275584236.1	Nudix family hydrolase	-
MKZ32_RS01220	yacG	270158..270346 (-)	189	WP_239798071.1	DNA gyrase inhibitor YacG	-
MKZ32_RS01225 (NTG6680_0248)	zapD	270448..271203 (-)	756	WP_239795598.1	cell division protein ZapD	-
MKZ32_RS01230 (NTG6680_0249)	coaE	271270..271896 (-)	627	WP_239795599.1	dephospho-CoA kinase	-
MKZ32_RS01235 (NTG6680_0250)	pilD	271893..272765 (-)	873	WP_239795600.1	prepilin peptidase	Machinery gene
MKZ32_RS01240 (NTG6680_0251)	pilC	273104..274321 (-)	1218	WP_239795601.1	type II secretion system F family protein	Machinery gene
MKZ32_RS01245 (NTG6680_0252)	-	274908..275417 (+)	510	WP_338140774.1	alpha/beta hydrolase	-
MKZ32_RS15335 (NTG6680_0253)	-	275550..275684 (+)	135	WP_275584237.1	hypothetical protein	-
MKZ32_RS01250 (NTG6680_0254)	-	275681..275908 (+)	228	WP_239795603.1	acyl carrier protein	-
MKZ32_RS01255 (NTG6680_0255)	-	275910..277136 (+)	1227	WP_239795604.1	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31725.71 Da
• Isoelectric Point: 6.8173

>NTDB_id=1151575 MKZ32_RS01235 WP_239795600.1 271893..272765(-) (pilD) [Candidatus Nitrotoga arctica strain 6680 isolate 6680]
MTALVELLQTLPFFFIVLCGITGLLVGSFLNVVIHRLPKMMEREWHAQCAELTGNEPANLPPYNLIMPHSACPHCGHKIS
ALENIPVISYLLLRGKCKDCNTHISARYPIVETVSGLLSAYVAWHFGFGLTAVAALVFIWMLLALTWIDVDTQLLPDDIT
LPLLWLGLLFNLSTTFTDINSAVIGAITGYLTLWSIYWLFKLATGKEGIGYGDFKLLAAIGAWLGWQMLPLVILLSSIVG
AVVGITLIIAARLGRNVPIPFGPYLAGGGVIALFWGQSLTQGYLQLFSIQ

Nucleotide

• Length: 873 bp

>NTDB_id=1151575 MKZ32_RS01235 WP_239795600.1 271893..272765(-) (pilD) [Candidatus Nitrotoga arctica strain 6680 isolate 6680]
ATGACAGCACTCGTTGAGTTACTACAAACCCTTCCGTTTTTTTTCATTGTTCTGTGCGGCATTACCGGTCTGCTGGTGGG
CAGTTTTCTAAATGTAGTCATTCATCGCTTGCCTAAAATGATGGAGCGTGAATGGCACGCCCAATGCGCTGAACTCACTG
GCAATGAACCAGCAAATTTACCGCCTTACAACTTGATCATGCCGCATTCTGCCTGTCCGCATTGTGGCCACAAGATAAGC
GCGCTGGAAAACATCCCGGTCATCAGCTATTTGCTGTTACGCGGCAAATGCAAGGATTGCAACACACATATCTCAGCACG
GTATCCCATCGTAGAAACGGTATCTGGACTTCTGAGCGCCTACGTCGCATGGCATTTCGGCTTCGGTTTAACTGCCGTAG
CCGCGTTGGTGTTTATCTGGATGCTGCTCGCACTAACCTGGATTGACGTTGATACTCAATTACTGCCCGATGACATCACA
TTGCCACTTCTGTGGCTGGGTCTACTGTTTAATTTGTCGACCACATTTACTGACATTAACAGTGCCGTCATCGGCGCAAT
CACAGGGTACCTAACTCTATGGAGTATATATTGGCTATTCAAGCTCGCCACCGGCAAGGAAGGCATAGGTTATGGTGACT
TCAAGCTGCTGGCGGCAATCGGCGCATGGCTGGGCTGGCAAATGCTACCGCTGGTTATTCTGCTCTCTTCAATAGTAGGC
GCAGTGGTCGGCATTACATTGATTATCGCGGCGCGTCTTGGCCGCAACGTCCCTATTCCATTTGGCCCGTATTTGGCAGG
CGGCGGCGTAATTGCGTTATTCTGGGGACAATCCCTTACGCAGGGCTATCTGCAACTGTTCAGTATTCAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.521	97.931	0.524
pilD	Vibrio campbellii strain DS40M4	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	48.387	96.207	0.466
pilD	Acinetobacter nosocomialis M2	47.67	96.207	0.459
pilD	Neisseria gonorrhoeae MS11	48.699	92.759	0.452