Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   P3C28_RS08275 Genome accession   NZ_OU532558
Coordinates   1578562..1578873 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni isolate     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1573562..1583873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C28_RS08255 (CJ121364_001618) ctsE 1574431..1575990 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  P3C28_RS08260 (CJ121364_001619) ctsX 1575980..1576567 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  P3C28_RS08265 (CJ121364_001620) ctsP 1576571..1577179 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  P3C28_RS08270 (CJ121364_001621) ctsD 1577172..1578584 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  P3C28_RS08275 (CJ121364_001622) ctsR 1578562..1578873 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  P3C28_RS08280 (CJ121364_001623) nifJ 1578897..1582457 (-) 3561 WP_002934762.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  P3C28_RS08285 (CJ121364_001624) - 1582550..1583191 (-) 642 WP_002934763.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=1151315 P3C28_RS08275 WP_002855438.1 1578562..1578873(-) (ctsR) [Campylobacter jejuni isolate]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1151315 P3C28_RS08275 WP_002855438.1 1578562..1578873(-) (ctsR) [Campylobacter jejuni isolate]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment