Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   P3C28_RS08260 Genome accession   NZ_OU532558
Coordinates   1575980..1576567 (-) Length   195 a.a.
NCBI ID   WP_002934760.1    Uniprot ID   -
Organism   Campylobacter jejuni isolate     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570980..1581567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C28_RS08240 (CJ121364_001615) - 1571728..1572492 (+) 765 WP_002851318.1 TIGR02757 family protein -
  P3C28_RS08245 (CJ121364_001616) - 1572496..1573260 (+) 765 WP_002855821.1 TSUP family transporter -
  P3C28_RS08250 (CJ121364_001617) ctsF 1573253..1574434 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  P3C28_RS08255 (CJ121364_001618) ctsE 1574431..1575990 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  P3C28_RS08260 (CJ121364_001619) ctsX 1575980..1576567 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  P3C28_RS08265 (CJ121364_001620) ctsP 1576571..1577179 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  P3C28_RS08270 (CJ121364_001621) ctsD 1577172..1578584 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  P3C28_RS08275 (CJ121364_001622) ctsR 1578562..1578873 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23387.48 Da        Isoelectric Point: 9.8409

>NTDB_id=1151312 P3C28_RS08260 WP_002934760.1 1575980..1576567(-) (ctsX) [Campylobacter jejuni isolate]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKVVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1151312 P3C28_RS08260 WP_002934760.1 1575980..1576567(-) (ctsX) [Campylobacter jejuni isolate]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGTGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

99.487

100

0.995

Multiple sequence alignment