Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   P3C28_RS08265 Genome accession   NZ_OU532558
Coordinates   1576571..1577179 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni isolate     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1571571..1582179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3C28_RS08240 (CJ121364_001615) - 1571728..1572492 (+) 765 WP_002851318.1 TIGR02757 family protein -
  P3C28_RS08245 (CJ121364_001616) - 1572496..1573260 (+) 765 WP_002855821.1 TSUP family transporter -
  P3C28_RS08250 (CJ121364_001617) ctsF 1573253..1574434 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  P3C28_RS08255 (CJ121364_001618) ctsE 1574431..1575990 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  P3C28_RS08260 (CJ121364_001619) ctsX 1575980..1576567 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  P3C28_RS08265 (CJ121364_001620) ctsP 1576571..1577179 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  P3C28_RS08270 (CJ121364_001621) ctsD 1577172..1578584 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  P3C28_RS08275 (CJ121364_001622) ctsR 1578562..1578873 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=1151313 P3C28_RS08265 WP_002851464.1 1576571..1577179(-) (ctsP) [Campylobacter jejuni isolate]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1151313 P3C28_RS08265 WP_002851464.1 1576571..1577179(-) (ctsP) [Campylobacter jejuni isolate]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTACGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment