Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   HUW69_RS05125 Genome accession   NZ_LT992490
Coordinates   1110118..1112247 (+) Length   709 a.a.
NCBI ID   WP_032474228.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1105118..1117247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS05100 (SAMEA4374365_01036) - 1105468..1106043 (-) 576 WP_000999602.1 PilZ domain-containing protein -
  HUW69_RS05105 (SAMEA4374365_01037) lolC 1106219..1107427 (+) 1209 WP_000468899.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  HUW69_RS05110 (SAMEA4374365_01038) lolD 1107420..1108106 (+) 687 WP_001061288.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  HUW69_RS05115 (SAMEA4374365_01039) lolE 1108107..1109351 (+) 1245 WP_000493019.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  HUW69_RS05120 (SAMEA4374365_01040) - 1109465..1109995 (-) 531 WP_001925023.1 DUF2062 domain-containing protein -
  HUW69_RS05125 (SAMEA4374365_01041) comEC 1110118..1112247 (+) 2130 WP_032474228.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HUW69_RS05130 (SAMEA4374365_01042) msbA 1112278..1114026 (+) 1749 WP_000052150.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  HUW69_RS05135 (SAMEA4374365_01043) lpxK 1114029..1115036 (+) 1008 WP_001928006.1 tetraacyldisaccharide 4'-kinase -
  HUW69_RS05140 (SAMEA4374365_01044) - 1115017..1115196 (+) 180 WP_000350068.1 Trm112 family protein -
  HUW69_RS05145 (SAMEA4374365_01045) kdsB 1115196..1115954 (+) 759 WP_174566462.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 709 a.a.        Molecular weight: 79785.99 Da        Isoelectric Point: 7.7764

>NTDB_id=1150270 HUW69_RS05125 WP_032474228.1 1110118..1112247(+) (comEC) [Vibrio cholerae strain 4295STDY6534200]
MGLLGYHRAGRKFLGFVVAILIIVLQGNLIRDQSNVLYQAGPDIIIKGRADSFFRQTRYAHEGFALIYEVNGQSLGTLFQ
PRVRLTTPILLQPNDLFEFSATVKPVIGRLNEIGFDAEAHYMAQSVIARVSVKANTPYTISPQEDVRSSLQQKLVTLTQN
SPFQGIILALTFGERNGIDEQEWRALRNSGLIHLVAISGLHIGIAFSVGYFLGLGMMRLHAKLLWSPFVCGALLAVFYAW
LAGFTLPTQRALIMCLLNVALVMLAFPLSALKRILLTLVAVLVWSPFTSLSNSFWMSFLAVAIVLYQLASQSQRQVWWKA
LLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWPGVATAYWPWVDWTFLPLDWALQF
ADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLLLSMIGLWWWFPSITPLWRMDVLDVGHGLAIVIEQDERAIVYDT
GSSWPGGSYVQSVIEPMLQQRGLRQVDGVILSHIDNDHAGDWQGLAERWQPDWIRASQLGTEFMPCIRGESWQWQSLHFT
VLWPPQAVSRAYNPHSCVIRMTDTQSNHSVLLSGDVTAMGEWLLARDGAQLQSDVMIVPHHGSKTSSTAEFIAQVNPKLA
IASVAKDNRWNLPNPQVVARYQAQQIEWLDTGQAGQISLFFYPEQLDWFTQRSLGWEPWYRQMLRKGVE

Nucleotide


Download         Length: 2130 bp        

>NTDB_id=1150270 HUW69_RS05125 WP_032474228.1 1110118..1112247(+) (comEC) [Vibrio cholerae strain 4295STDY6534200]
ATGGGTTTGCTCGGTTATCACCGGGCTGGCCGTAAATTCCTTGGCTTCGTAGTTGCCATACTAATCATTGTGCTACAAGG
CAACCTTATACGAGATCAATCCAATGTGCTCTATCAAGCAGGGCCGGATATTATCATAAAAGGCCGTGCCGACAGCTTTT
TTAGGCAAACCCGTTATGCTCATGAAGGATTTGCCTTAATTTATGAGGTCAATGGCCAAAGCTTGGGCACATTGTTTCAG
CCTCGAGTACGCTTAACTACCCCTATTCTTTTGCAGCCGAATGATCTATTCGAATTTTCAGCGACAGTAAAGCCGGTTAT
TGGCCGGCTCAACGAAATCGGTTTTGATGCAGAAGCTCATTATATGGCTCAATCTGTCATTGCTAGGGTGAGCGTTAAGG
CCAATACACCATACACAATTTCACCTCAAGAAGACGTTAGGTCAAGCTTGCAGCAAAAGCTTGTTACATTGACGCAAAAT
AGCCCTTTCCAAGGGATTATTTTAGCCCTGACGTTTGGTGAGCGAAACGGTATTGATGAGCAAGAGTGGCGAGCCTTACG
CAATAGTGGCTTAATTCATTTAGTGGCGATTTCGGGGCTGCACATTGGTATCGCTTTTAGTGTGGGTTATTTTCTCGGGC
TCGGCATGATGCGCCTTCATGCTAAGTTACTTTGGTCTCCTTTCGTGTGTGGGGCTTTACTGGCGGTGTTCTACGCTTGG
CTTGCCGGATTTACGTTGCCCACTCAGCGTGCATTGATCATGTGCTTACTCAATGTAGCGTTGGTGATGCTGGCTTTTCC
TCTTTCTGCGCTCAAGCGGATTTTACTCACCTTGGTTGCGGTCTTGGTTTGGTCACCCTTCACCTCACTTTCAAACAGTT
TCTGGATGTCGTTTTTGGCGGTCGCGATTGTACTCTACCAATTAGCAAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCT
CTGCTCTGGGCACAGGTGTTTCTCGTCTGTTTAATGGCGCCGGTCACGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGC
AGTTCTGTACAATTTGGTGTTTATTCCTTGGTTTTCGTTGGTGATTGTCCCAGCTTTGTTTTTGGGCCTATTACTTATGG
TGGTATGGCCCGGTGTTGCTACTGCTTACTGGCCTTGGGTGGATTGGACGTTTTTACCGCTCGATTGGGCTTTGCAGTTT
GCCGATGTAGGCTGGTGGGTGGTTCCCAGTAAAGTACAAGGTGTGGTCGCAGCGAGTGTGGCCATCCTCTTGCTTTATCG
ATTTATGAGCCTAAAAGCCTGCAGCTTATTGTTGAGTATGATTGGCTTATGGTGGTGGTTTCCCTCTATCACTCCGCTTT
GGCGAATGGATGTGCTGGATGTTGGACATGGCTTGGCGATTGTGATTGAGCAAGATGAGCGAGCGATAGTCTACGACACA
GGCAGCAGTTGGCCGGGAGGCAGCTATGTGCAAAGTGTGATTGAGCCTATGTTACAGCAGCGAGGGCTACGCCAAGTCGA
TGGGGTGATTTTAAGTCATATTGATAATGATCATGCGGGTGATTGGCAAGGTTTAGCTGAGCGCTGGCAACCCGATTGGA
TTCGCGCTAGCCAACTCGGGACAGAGTTTATGCCTTGTATCCGAGGTGAAAGTTGGCAGTGGCAATCTCTGCATTTTACG
GTGTTATGGCCACCACAAGCGGTTAGCCGAGCGTACAACCCGCATTCGTGTGTGATTCGTATGACTGATACTCAATCTAA
CCATTCTGTACTGCTCTCCGGGGATGTCACGGCTATGGGGGAGTGGCTGCTTGCTCGCGACGGAGCGCAGCTGCAAAGTG
ACGTGATGATTGTACCGCACCACGGCAGTAAAACGTCGTCCACTGCAGAGTTTATTGCCCAAGTGAATCCCAAACTTGCG
ATTGCTTCTGTGGCGAAAGATAACCGCTGGAACTTGCCTAATCCGCAAGTCGTAGCACGTTATCAAGCTCAGCAAATTGA
GTGGCTAGATACTGGACAAGCTGGGCAAATTAGCCTCTTTTTCTATCCAGAGCAGTTGGATTGGTTTACCCAACGCAGCC
TTGGCTGGGAGCCTTGGTATAGGCAGATGCTGCGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(170-426)

Metallo-beta-lactamase superfamily (Lactamase_B)

(461-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

89.845

100

0.898
  comEC Vibrio parahaemolyticus RIMD 2210633

40.871

100

0.41
  comEC Vibrio campbellii strain DS40M4

40.903

100

0.409

Multiple sequence alignment