Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DG022_RS11680 Genome accession   NZ_LT963436
Coordinates   2364835..2365347 (-) Length   170 a.a.
NCBI ID   WP_002484307.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2359835..2370347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG022_RS11635 - 2360132..2360746 (-) 615 WP_078073144.1 FMN-binding negative transcriptional regulator -
  DG022_RS11640 - 2360788..2361186 (-) 399 WP_172969224.1 nuclear transport factor 2 family protein -
  DG022_RS11645 - 2361228..2361572 (-) 345 WP_047505227.1 DUF4260 domain-containing protein -
  DG022_RS11655 - 2362166..2362480 (+) 315 WP_225791762.1 DUF1093 domain-containing protein -
  DG022_RS11660 - 2362722..2362994 (-) 273 WP_048787278.1 hypothetical protein -
  DG022_RS11665 - 2363814..2364020 (+) 207 WP_011303963.1 hypothetical protein -
  DG022_RS11670 - 2364045..2364284 (+) 240 WP_047505220.1 hypothetical protein -
  DG022_RS12340 - 2364281..2364421 (+) 141 WP_162835602.1 hypothetical protein -
  DG022_RS11675 rpsR 2364543..2364785 (-) 243 WP_002484306.1 30S ribosomal protein S18 -
  DG022_RS11680 ssbA 2364835..2365347 (-) 513 WP_002484307.1 single-stranded DNA-binding protein Machinery gene
  DG022_RS11685 rpsF 2365366..2365671 (-) 306 WP_002484308.1 30S ribosomal protein S6 -
  DG022_RS11690 - 2366093..2366899 (+) 807 WP_047505216.1 GH25 family lysozyme -
  DG022_RS11695 ychF 2367061..2368158 (-) 1098 WP_047505213.1 redox-regulated ATPase YchF -
  DG022_RS11700 - 2368158..2368373 (-) 216 WP_002484311.1 DUF951 domain-containing protein -
  DG022_RS11705 - 2368402..2369280 (-) 879 WP_047505210.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18948.48 Da        Isoelectric Point: 4.9163

>NTDB_id=1148925 DG022_RS11680 WP_002484307.1 2364835..2365347(-) (ssbA) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNQNQRHGQEGNNNNFQNFGGQQSGQNTSSYQSNNNNNSSNNNQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1148925 DG022_RS11680 WP_002484307.1 2364835..2365347(-) (ssbA) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACTAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAATCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCGGATTTCATTAACTGTGTCGTTT
TTAGAAAACAAGCAGAGAATGTTAACAACTACTTATTTAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGTCGTCGTATATTTGTGACTGAAGTAGTTTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGTCAAGAAGGAAATAACAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACGT
CATCTTATCAAAGTAATAACAACAATAATTCATCAAACAATAATCAATCTGATAACCCATTTGCAAATGCAAACGGACCA
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.953

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

57.225

100

0.582
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.706

0.382

Multiple sequence alignment