Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DG022_RS07575 Genome accession   NZ_LT963436
Coordinates   1544756..1545631 (-) Length   291 a.a.
NCBI ID   WP_011303269.1    Uniprot ID   Q49X34
Organism   Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1539756..1550631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG022_RS07560 xerC 1540012..1540902 (-) 891 WP_037538546.1 tyrosine recombinase XerC -
  DG022_RS07565 trmFO 1541021..1542328 (-) 1308 WP_047503612.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DG022_RS07570 topA 1542483..1544549 (-) 2067 WP_069826955.1 type I DNA topoisomerase -
  DG022_RS07575 dprA 1544756..1545631 (-) 876 WP_011303269.1 DNA-processing protein DprA Machinery gene
  DG022_RS07580 sucD 1545939..1546844 (-) 906 WP_002483475.1 succinate--CoA ligase subunit alpha -
  DG022_RS07585 sucC 1546866..1548032 (-) 1167 WP_011303271.1 ADP-forming succinate--CoA ligase subunit beta -
  DG022_RS07590 - 1548140..1548910 (-) 771 WP_047503601.1 ribonuclease HII -
  DG022_RS07595 ylqF 1548917..1549777 (-) 861 WP_069795372.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33710.41 Da        Isoelectric Point: 10.3610

>NTDB_id=1148916 DG022_RS07575 WP_011303269.1 1544756..1545631(-) (dprA) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTTNLEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1148916 DG022_RS07575 WP_011303269.1 1544756..1545631(-) (dprA) [Staphylococcus saprophyticus isolate Staphylococcus saprophyticus 883]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTAGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTCACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGTACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGGGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q49X34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.338

100

0.512
  dprA Staphylococcus aureus N315

50.338

100

0.512
  dprA Lactococcus lactis subsp. cremoris KW2

38.966

99.656

0.388
  dprA Vibrio campbellii strain DS40M4

36.949

100

0.375

Multiple sequence alignment