Detailed information NTG1148840

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C6H37_RS04950
• Genome accession: NZ_LT963408
• Coordinates: 955808..956680 (-)
• Length: 290 a.a.
• NCBI ID: WP_005736087.1
• Uniprot ID: -
• Organism: Pseudomonas syringae group genomosp. 3 isolate CFBP6411
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 950808..961680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6H37_RS04915 (CFBP6411_00884)	-	951519..952817 (-)	1299	WP_104698278.1	NAD(P)/FAD-dependent oxidoreductase	-
C6H37_RS04925 (CFBP6411_00885)	-	953034..953567 (-)	534	WP_005614784.1	MOSC domain-containing protein	-
C6H37_RS04930 (CFBP6411_00886)	-	953564..954193 (-)	630	WP_005736090.1	DUF1780 domain-containing protein	-
C6H37_RS04935	-	954390..954716 (+)	327	WP_005736089.1	hypothetical protein	-
C6H37_RS04940 (CFBP6411_00887)	yacG	954982..955191 (-)	210	WP_003381207.1	DNA gyrase inhibitor YacG	-
C6H37_RS04945 (CFBP6411_00888)	coaE	955188..955811 (-)	624	WP_005736088.1	dephospho-CoA kinase	-
C6H37_RS04950 (CFBP6411_00889)	pilD	955808..956680 (-)	873	WP_005736087.1	prepilin peptidase	Machinery gene
C6H37_RS04955 (CFBP6411_00890)	pilC	956682..957899 (-)	1218	WP_005736085.1	type II secretion system F family protein	Machinery gene
C6H37_RS04960 (CFBP6411_00891)	pilB	957902..959596 (-)	1695	WP_104698279.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C6H37_RS04965 (CFBP6411_00892)	pilA2	959823..960251 (+)	429	WP_005736082.1	pilin	Machinery gene
C6H37_RS04970 (CFBP6411_00893)	-	960414..960779 (-)	366	WP_005736080.1	winged helix-turn-helix transcriptional regulator	-
C6H37_RS04975 (CFBP6411_00894)	gstA	960937..961557 (+)	621	WP_058975496.1	glutathione transferase GstA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31975.21 Da
• Isoelectric Point: 8.1603

>NTDB_id=1148840 C6H37_RS04950 WP_005736087.1 955808..956680(-) (pilD) [Pseudomonas syringae group genomosp. 3 isolate CFBP6411]
MPLLDLLASSPLAFVTTCCLLGLIVGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPDQPVFNLILPHSSCPHCAHKIR
PWENLPIISYLLLRGKCSHCKAAISKRYPLVELTCAVLSAYVAWHFGFGWQVAAILVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLSDALWGAVAGYLTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=1148840 C6H37_RS04950 WP_005736087.1 955808..956680(-) (pilD) [Pseudomonas syringae group genomosp. 3 isolate CFBP6411]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCTCCCCTGGCCTTCGTCACCACCTGCTGCCTACTCGGCCTCATCGTCGGAAG
CTTCCTCAACGTAGTCGTCTACCGCCTCCCGAAAATGATGGAGCGCGACTGGAAAGCCCAATCACGGGAAATGCTCGGCC
TCCCTGCCGAACCGGACCAACCCGTCTTCAACCTGATCCTGCCGCACTCAAGCTGCCCGCACTGCGCGCACAAGATCCGC
CCATGGGAAAATCTGCCGATCATCAGTTACCTGTTGCTGCGCGGTAAATGCTCGCACTGCAAAGCCGCCATCAGCAAGCG
CTACCCATTGGTAGAGCTGACCTGCGCAGTGTTATCGGCCTACGTCGCCTGGCACTTCGGCTTTGGCTGGCAGGTAGCTG
CGATACTGGTGTTGAGTTGGGGTTTGCTGGCGATGAGTCTGATCGATGCCGATCATCAGCTGTTGCCTGACTCTCTGGTA
CTTCCACTGCTGTGGCTGGGCCTGATCGTTAACGCCTTTGGGCTGTTCACCTCGCTGAGCGATGCGCTGTGGGGTGCGGT
GGCCGGTTATCTGACGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACGGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAATTGCTGGCCATGCTTGGCGCGTGGGGTGGCTGGCAGATTCTGCCGTTGACCATTCTGTTGTCGTCGCTAGTGGGT
GCAGTACTTGGGGTGATCATGATGCGCGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTATATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.417	97.586	0.531
pilD	Vibrio campbellii strain DS40M4	51.59	97.586	0.503
pilD	Acinetobacter baumannii D1279779	52.19	94.483	0.493
pilD	Acinetobacter nosocomialis M2	51.825	94.483	0.49
pilD	Neisseria gonorrhoeae MS11	52.239	92.414	0.483