Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C6H38_RS19890 Genome accession   NZ_LT963402
Coordinates   4175732..4177948 (-) Length   738 a.a.
NCBI ID   WP_060412567.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. avii isolate CFBP3846     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4170732..4182948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H38_RS19860 (CFBP3846_03813) murB 4171531..4172550 (-) 1020 WP_060412571.1 UDP-N-acetylmuramate dehydrogenase -
  C6H38_RS19865 (CFBP3846_03814) kdsB 4172585..4173349 (-) 765 WP_060412570.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6H38_RS19870 (CFBP3846_03815) - 4173346..4173531 (-) 186 WP_003381112.1 Trm112 family protein -
  C6H38_RS19875 (CFBP3846_03816) lpxK 4173549..4174544 (-) 996 WP_060412569.1 tetraacyldisaccharide 4'-kinase -
  C6H38_RS19880 (CFBP3846_03817) - 4174544..4174975 (-) 432 WP_003381117.1 ExbD/TolR family protein -
  C6H38_RS19885 (CFBP3846_03818) exbB 4174972..4175649 (-) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6H38_RS19890 (CFBP3846_03819) comA 4175732..4177948 (-) 2217 WP_060412567.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6H38_RS19895 (CFBP3846_03820) - 4178186..4180213 (+) 2028 WP_060412566.1 type VI secretion system tip protein VgrG -
  C6H38_RS19900 (CFBP3846_03821) - 4180210..4181061 (+) 852 WP_060412565.1 DUF4123 domain-containing protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80644.97 Da        Isoelectric Point: 10.5961

>NTDB_id=1148821 C6H38_RS19890 WP_060412567.1 4175732..4177948(-) (comA) [Pseudomonas syringae pv. avii isolate CFBP3846]
MRSGMIALALGLVALRFLPVLPPIWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLQQRLDGQTLWLQG
KVAGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLLSFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGTWSWWQSWTLAQWLIALGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPVPVVGEGLLWVAGGALQWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELTRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPNGNAGSCMLSVDAGGERLLLTGDIDVHAE
RAAMDSGFDLRAHWLQAPHHGSRSSSSKRFLQAVAPLGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1148821 C6H38_RS19890 WP_060412567.1 4175732..4177948(-) (comA) [Pseudomonas syringae pv. avii isolate CFBP3846]
ATGCGCTCAGGGATGATCGCGCTCGCGTTGGGGCTGGTGGCCCTGCGCTTTCTGCCGGTTTTACCGCCGATCTGGCTCTT
GTTGCTGATGCCGATACTGGCCTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGCTTCACGT
GGGCGTGCGTTTCGGCGCAGTGGGCGTTGAATGACCGTTTGCAGCAACGGCTGGACGGCCAGACGCTGTGGCTGCAAGGC
AAAGTGGCCGGTTTGCCGAGCGTTGCCGAGGGCGTGGTGCGTTTCGAGCTGGAGCACGCCACGTCGCGGCGGGCGAAGTT
GCCTGCGCTGATCCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGCTGGCGACTGGCGGTAAAGCTCA
AGCGCCCCGGCGGGCTGGTCAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGTATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGCTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGCGGTCGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTCGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGCTTGCTTGCTGGTGTTATTTACGCGCTG
GTCGCAGGTCTCGCCCGCTGGGGACTGTGGCCACGGGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCGTTCATTGC
TGCGCTGGGCTACGGATTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTATTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGTGTGGTCTGGCCGTTTTTGCTTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTGCTGATTTTCAGCGGCCGTCTGGGTAC
CTGGAGCTGGTGGCAGAGCTGGACGCTCGCGCAGTGGCTGATCGCTCTTGGCCTGCTGCCTATTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTCGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCACTG
ATCGGCACGTTGCTGCTGCCGGTCCCCGTTGTTGGCGAGGGCCTGCTCTGGGTGGCGGGAGGCGCGCTGCAATGGCTGTT
CGTGTTTCTTGGTTGGGTGGCCGAGGCCTTGCCCGCCTGGCTGCCCAGTGCGGTGCCTGGCTGGGCATGGCTGTTGAGTC
TGCTCGGGGCCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGCTGGCCATTGTTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCTGTGCCGATGGGGCAGGTCGAGGTGTTGCAACTGGACGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACACTGCTCTACGATGCAGGGCCGCGTTTCGGTGAGTTCGATATCGGCCAACGGGTGGTCGTGC
CGGCGATGCGCAAGTCCGGTGTTCGTCACTTGGATCTGATGCTGATCAGCCATGCCGATGCGGATCATGCCGGCGGGGCG
GCAGCGGTTCATCGGGCATTTCCGGTGAACCGCGTGCTGGGCGGGGAACTGACCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCAACGGTA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCCGGTGGTGAGCGTCTACTGCTGACGGGCGACATTGATGTGCACGCCGAG
CGTGCGGCAATGGACAGCGGTTTTGACCTTCGTGCTCACTGGTTGCAAGCCCCGCATCACGGCAGCCGCAGCTCATCGTC
CAAACGGTTTCTGCAGGCGGTTGCGCCGCTGGGCGTGCTCATTTCCCGCGGGCAGAACAATGCCTTCGGTCATCCGCATC
CGTTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTAGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAACGGGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.687

97.019

0.618
  comA Ralstonia pseudosolanacearum GMI1000

32.262

100

0.367

Multiple sequence alignment