Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C6H38_RS19885 Genome accession   NZ_LT963402
Coordinates   4174972..4175649 (-) Length   225 a.a.
NCBI ID   WP_003381119.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. avii isolate CFBP3846     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4169972..4180649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H38_RS19860 (CFBP3846_03813) murB 4171531..4172550 (-) 1020 WP_060412571.1 UDP-N-acetylmuramate dehydrogenase -
  C6H38_RS19865 (CFBP3846_03814) kdsB 4172585..4173349 (-) 765 WP_060412570.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6H38_RS19870 (CFBP3846_03815) - 4173346..4173531 (-) 186 WP_003381112.1 Trm112 family protein -
  C6H38_RS19875 (CFBP3846_03816) lpxK 4173549..4174544 (-) 996 WP_060412569.1 tetraacyldisaccharide 4'-kinase -
  C6H38_RS19880 (CFBP3846_03817) - 4174544..4174975 (-) 432 WP_003381117.1 ExbD/TolR family protein -
  C6H38_RS19885 (CFBP3846_03818) exbB 4174972..4175649 (-) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6H38_RS19890 (CFBP3846_03819) comA 4175732..4177948 (-) 2217 WP_060412567.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6H38_RS19895 (CFBP3846_03820) - 4178186..4180213 (+) 2028 WP_060412566.1 type VI secretion system tip protein VgrG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24257.56 Da        Isoelectric Point: 8.5248

>NTDB_id=1148820 C6H38_RS19885 WP_003381119.1 4174972..4175649(-) (exbB) [Pseudomonas syringae pv. avii isolate CFBP3846]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1148820 C6H38_RS19885 WP_003381119.1 4174972..4175649(-) (exbB) [Pseudomonas syringae pv. avii isolate CFBP3846]
GTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCCGATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCATTGCGCCGCCGCACCTGCTGGGTCAGGCGTGGCAGTGGATTCAGGAAA
AGAAACTCGATAACGAAAAGCTCAAGCAGTTGCGCGCCGACTCGCCGCTGGGCGAAATCCTTGCCGCTGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAAGCCGCCGCCCGTGTCATCCATGACCTGGAGCGCTACCT
GAGCGCGCTGGGCTCTATCGCCGCGATGGCCCCGTTGCTCGGTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCG
GTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTGCTGGCGAGTGGTATCTCCAAGGCACTGATCTGTACCGCA
TCGGGCCTTATCGTCGCGATCCCGGCGATCTTCTTTCACCGCTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGATCGACGCCAAAATCGACCTCA
AGTCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment