Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C6H34_RS07860 Genome accession   NZ_LT963395
Coordinates   1632712..1634928 (+) Length   738 a.a.
NCBI ID   WP_065349317.1    Uniprot ID   A0A193SLN0
Organism   Pseudomonas cerasi isolate PL963     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1627712..1639928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H34_RS07845 (PL963_01517) - 1630048..1630674 (+) 627 WP_065349315.1 glutathione S-transferase -
  C6H34_RS07850 (PL963_01518) - 1630858..1631790 (+) 933 WP_065351032.1 ABC transporter ATP-binding protein -
  C6H34_RS07855 (PL963_01519) - 1631787..1632575 (+) 789 WP_065349316.1 ABC transporter permease -
  C6H34_RS07860 (PL963_01520) comA 1632712..1634928 (+) 2217 WP_065349317.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6H34_RS07865 (PL963_01521) exbB 1635010..1635687 (+) 678 WP_003430973.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6H34_RS07870 (PL963_01522) - 1635684..1636115 (+) 432 WP_003409582.1 ExbD/TolR family protein -
  C6H34_RS07875 (PL963_01523) lpxK 1636115..1637110 (+) 996 WP_065349318.1 tetraacyldisaccharide 4'-kinase -
  C6H34_RS07880 (PL963_01524) - 1637128..1637313 (+) 186 WP_002552679.1 Trm112 family protein -
  C6H34_RS07885 (PL963_01525) kdsB 1637310..1638074 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6H34_RS07890 (PL963_01526) murB 1638109..1639128 (+) 1020 WP_065349319.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80335.60 Da        Isoelectric Point: 10.4734

>NTDB_id=1148788 C6H34_RS07860 WP_065349317.1 1632712..1634928(+) (comA) [Pseudomonas cerasi isolate PL963]
MRTGMIALALGLLALRFLPALPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWMQG
KVVGLPSVAEGVVRFELEGATSRRARLPARIRVAWYGGQPVSSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNTVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPIWAWWLSLLGALLLLLPKGIPVRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPNGNPASCILSVDAGGERLLLAGDIDVNAE
RAAMDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1148788 C6H34_RS07860 WP_065349317.1 1632712..1634928(+) (comA) [Pseudomonas cerasi isolate PL963]
ATGCGCACAGGGATGATCGCGCTTGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGTTGCCGCCGACCTGGCTATT
GCTGTTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTCCGTACCTATCCACTGGCGTTGTTCCTGCTCGGTTTCACTT
GGGCCTGCGTGTCGGCGCAGTGGGCGTTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGATGCAGGGC
AAGGTGGTCGGTTTACCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAACTGGAAGGTGCCACGTCACGACGTGCCAGGCT
GCCCGCGCGAATCAGGGTGGCCTGGTACGGCGGCCAGCCGGTGAGCAGCGGCGAGCGCTGGCGTATGGCGGTCAAACTCA
AGCGACCGGCCGGGCTGGTCAATCCGGATGCTTTCGACTATGAAGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTAGTGGATGGTCAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCATTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGTGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGGCTATCGAGCACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGTCAGCACATCGGGTTGCTGGCCGGGGTGATTTACGCCTTG
GTCGCAGGTCTGGCGCGCTGGGGGCTGTGGCCGCGCTTTTTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGCCATCTGGGTGTGGTCTGGCCCTTGTTGCTGTCCTTCAACACGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCAGCGGTCGGCATTCTGATCCTGATTTTCAGCGGACGTCTCGGTGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTTGGCTTGTTGCCGATCCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGTGGGCCGTTTGCCAACTTGCTTGCCGTCCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCGGTCCCTGTGGTCGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGACGCGGTGGCTGCCGCATTGCCGGCCTGGTTACCCAGTGCGGTGCCAATCTGGGCATGGTGGTTGAGCC
TGCTCGGGGCCTTGCTCTTGTTGCTGCCCAAGGGCATACCCGTGCGGCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCACTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACCCGCAACCACACACTCCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGTGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCCGACCATGCCGGAGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTCGCGCCGCAACTCGATGCCCG
ATTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTAATGGCA
ATCCAGCCTCCTGCATCCTCAGCGTCGACGCCGGGGGCGAGCGTCTGCTGCTGGCCGGCGATATCGATGTGAACGCCGAG
CGCGCGGCGATGGACAGCGGGTTCGACCTTCGTGCCCACTGGTTGCAGTCGCCACATCACGGCAGCCGGACCTCGTCGTC
CAAAGCGTTTCTGCGCGCCGTGGCACCGGTAGGCGTGCTGATTTCCCGTGGTCGCAACAACGCGTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCCTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCGGTCCGCCTGCAACTG
GGGACGTTCGGAACGCCACAGGCCGAGCGCGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A193SLN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.011

97.019

0.602
  comA Ralstonia pseudosolanacearum GMI1000

35.231

100

0.402

Multiple sequence alignment