Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C6H34_RS07865 Genome accession   NZ_LT963395
Coordinates   1635010..1635687 (+) Length   225 a.a.
NCBI ID   WP_003430973.1    Uniprot ID   A0A193SLD5
Organism   Pseudomonas cerasi isolate PL963     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630010..1640687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H34_RS07845 (PL963_01517) - 1630048..1630674 (+) 627 WP_065349315.1 glutathione S-transferase -
  C6H34_RS07850 (PL963_01518) - 1630858..1631790 (+) 933 WP_065351032.1 ABC transporter ATP-binding protein -
  C6H34_RS07855 (PL963_01519) - 1631787..1632575 (+) 789 WP_065349316.1 ABC transporter permease -
  C6H34_RS07860 (PL963_01520) comA 1632712..1634928 (+) 2217 WP_065349317.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C6H34_RS07865 (PL963_01521) exbB 1635010..1635687 (+) 678 WP_003430973.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C6H34_RS07870 (PL963_01522) - 1635684..1636115 (+) 432 WP_003409582.1 ExbD/TolR family protein -
  C6H34_RS07875 (PL963_01523) lpxK 1636115..1637110 (+) 996 WP_065349318.1 tetraacyldisaccharide 4'-kinase -
  C6H34_RS07880 (PL963_01524) - 1637128..1637313 (+) 186 WP_002552679.1 Trm112 family protein -
  C6H34_RS07885 (PL963_01525) kdsB 1637310..1638074 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6H34_RS07890 (PL963_01526) murB 1638109..1639128 (+) 1020 WP_065349319.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24242.55 Da        Isoelectric Point: 8.5280

>NTDB_id=1148789 C6H34_RS07865 WP_003430973.1 1635010..1635687(+) (exbB) [Pseudomonas cerasi isolate PL963]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDSEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=1148789 C6H34_RS07865 WP_003430973.1 1635010..1635687(+) (exbB) [Pseudomonas cerasi isolate PL963]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCAT
CGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCACCGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCGGACTCGCCGCTGGGTGAAATCCTGGCCGCAGGTCTGGCCAAT
TCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCTGCGCGGGTCATTCATGAGCTGGAGCGCTACCT
CAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTGGTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCG
GCTCGTTCAACAGCTCCGGGGCTACCGCCAACGCCGGCGTGCTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCG
TCGGGTCTTATCGTCGCGATCCCGGCGATCTTCTTTCATCGCTTTCTGCAGAGCCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A193SLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738

Multiple sequence alignment